Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3448

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3446 and Rru_A3447 are separated by 258 nucleotidesRru_A3447 and Rru_A3448 are separated by 40 nucleotidesRru_A3448 and Rru_A3449 are separated by 56 nucleotidesRru_A3449 and Rru_A3450 are separated by 90 nucleotides Rru_A3446: Rru_A3446 - HPrNtr (NCBI), at 3,970,828 to 3,971,166 _A3446 Rru_A3447: Rru_A3447 - PTS system fructose subfamily IIA component (NCBI), at 3,971,425 to 3,971,829 _A3447 Rru_A3448: Rru_A3448 - Uncharacterized P-loop ATPase protein UPF0042 (NCBI), at 3,971,870 to 3,972,886 _A3448 Rru_A3449: Rru_A3449 - HPr kinase (NCBI), at 3,972,943 to 3,973,428 _A3449 Rru_A3450: Rru_A3450 - Ribonuclease T2 (NCBI), at 3,973,519 to 3,974,589 _A3450 Position (kb) 3971 3972 3973Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3971.369 kb on + strandat 3971.369 kb on + strandat 3971.371 kb on + strandat 3971.371 kb on + strandat 3971.371 kb on + strandat 3971.371 kb on + strandat 3971.371 kb on + strandat 3971.959 kb on - strandat 3971.991 kb on - strand, within Rru_A3448at 3971.991 kb on - strand, within Rru_A3448at 3972.007 kb on - strand, within Rru_A3448at 3972.007 kb on - strand, within Rru_A3448at 3972.007 kb on - strand, within Rru_A3448at 3972.102 kb on + strand, within Rru_A3448at 3972.102 kb on + strand, within Rru_A3448at 3972.103 kb on - strand, within Rru_A3448at 3972.103 kb on - strand, within Rru_A3448at 3972.103 kb on - strand, within Rru_A3448at 3972.103 kb on - strand, within Rru_A3448at 3972.103 kb on - strand, within Rru_A3448at 3972.139 kb on + strand, within Rru_A3448at 3972.140 kb on - strand, within Rru_A3448at 3972.154 kb on - strand, within Rru_A3448at 3972.320 kb on - strand, within Rru_A3448at 3972.651 kb on + strand, within Rru_A3448at 3972.651 kb on + strand, within Rru_A3448at 3972.651 kb on + strand, within Rru_A3448at 3972.651 kb on + strand, within Rru_A3448at 3972.957 kb on + strandat 3972.958 kb on - strandat 3972.958 kb on - strandat 3972.958 kb on - strandat 3972.958 kb on - strandat 3972.960 kb on + strandat 3972.960 kb on + strandat 3973.479 kb on + strandat 3973.480 kb on - strandat 3973.480 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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3,971,369 + -0.4
3,971,369 + -0.3
3,971,371 + +0.1
3,971,371 + -0.7
3,971,371 + -1.3
3,971,371 + +0.6
3,971,371 + +0.8
3,971,959 - -0.5
3,971,991 - Rru_A3448 0.12 -0.4
3,971,991 - Rru_A3448 0.12 -2.6
3,972,007 - Rru_A3448 0.13 -0.4
3,972,007 - Rru_A3448 0.13 -0.3
3,972,007 - Rru_A3448 0.13 -0.0
3,972,102 + Rru_A3448 0.23 +1.4
3,972,102 + Rru_A3448 0.23 +0.0
3,972,103 - Rru_A3448 0.23 -3.7
3,972,103 - Rru_A3448 0.23 -1.9
3,972,103 - Rru_A3448 0.23 +1.4
3,972,103 - Rru_A3448 0.23 -0.2
3,972,103 - Rru_A3448 0.23 -1.4
3,972,139 + Rru_A3448 0.26 +1.0
3,972,140 - Rru_A3448 0.27 -2.4
3,972,154 - Rru_A3448 0.28 -0.1
3,972,320 - Rru_A3448 0.44 -0.9
3,972,651 + Rru_A3448 0.77 -0.0
3,972,651 + Rru_A3448 0.77 -0.2
3,972,651 + Rru_A3448 0.77 -0.9
3,972,651 + Rru_A3448 0.77 -1.3
3,972,957 + -0.2
3,972,958 - +0.8
3,972,958 - +0.4
3,972,958 - +1.8
3,972,958 - -0.1
3,972,960 + -1.4
3,972,960 + -0.1
3,973,479 + -1.2
3,973,480 - +0.2
3,973,480 - -0.7

Or see this region's nucleotide sequence