Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3368 and Rru_A3369 are separated by 132 nucleotides Rru_A3369 and Rru_A3370 are separated by 177 nucleotides
Rru_A3368: Rru_A3368 - Transcriptional Regulator, LysR family (NCBI), at 3,884,763 to 3,885,686
_A3368
Rru_A3369: Rru_A3369 - hypothetical protein (NCBI), at 3,885,819 to 3,886,025
_A3369
Rru_A3370: Rru_A3370 - Protein of unknown function DUF6, transmembrane (NCBI), at 3,886,203 to 3,887,057
_A3370
Position (kb)
3885
3886
3887 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3884.887 kb on + strand, within Rru_A3368 at 3884.887 kb on + strand, within Rru_A3368 at 3884.888 kb on - strand, within Rru_A3368 at 3884.888 kb on - strand, within Rru_A3368 at 3885.481 kb on + strand, within Rru_A3368 at 3885.482 kb on - strand, within Rru_A3368 at 3885.734 kb on + strand at 3885.767 kb on + strand at 3885.968 kb on + strand, within Rru_A3369 at 3885.969 kb on - strand, within Rru_A3369 at 3886.143 kb on + strand at 3886.144 kb on - strand at 3886.144 kb on - strand at 3886.160 kb on + strand at 3886.160 kb on + strand at 3886.160 kb on + strand at 3886.161 kb on - strand at 3886.161 kb on - strand at 3886.356 kb on + strand, within Rru_A3370 at 3886.356 kb on + strand, within Rru_A3370 at 3886.356 kb on + strand, within Rru_A3370 at 3886.357 kb on - strand, within Rru_A3370 at 3886.357 kb on - strand, within Rru_A3370 at 3886.357 kb on - strand, within Rru_A3370 at 3886.368 kb on + strand, within Rru_A3370 at 3886.369 kb on - strand, within Rru_A3370 at 3886.369 kb on - strand, within Rru_A3370 at 3886.369 kb on - strand, within Rru_A3370 at 3886.762 kb on - strand, within Rru_A3370 at 3886.762 kb on - strand, within Rru_A3370 at 3886.779 kb on + strand, within Rru_A3370 at 3886.779 kb on + strand, within Rru_A3370 at 3886.818 kb on + strand, within Rru_A3370 at 3886.818 kb on + strand, within Rru_A3370 at 3886.819 kb on - strand, within Rru_A3370 at 3886.819 kb on - strand, within Rru_A3370 at 3886.860 kb on + strand, within Rru_A3370 at 3886.861 kb on - strand, within Rru_A3370 at 3886.861 kb on - strand, within Rru_A3370 at 3886.861 kb on - strand, within Rru_A3370 at 3887.021 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 3,884,887 + Rru_A3368 0.13 +0.4 3,884,887 + Rru_A3368 0.13 -2.1 3,884,888 - Rru_A3368 0.14 +2.0 3,884,888 - Rru_A3368 0.14 -0.9 3,885,481 + Rru_A3368 0.78 -0.3 3,885,482 - Rru_A3368 0.78 +0.0 3,885,734 + +0.3 3,885,767 + +0.4 3,885,968 + Rru_A3369 0.72 -0.1 3,885,969 - Rru_A3369 0.72 +1.5 3,886,143 + -0.2 3,886,144 - +0.0 3,886,144 - -0.1 3,886,160 + -0.8 3,886,160 + +0.1 3,886,160 + +0.7 3,886,161 - +0.6 3,886,161 - -0.9 3,886,356 + Rru_A3370 0.18 -0.3 3,886,356 + Rru_A3370 0.18 -0.3 3,886,356 + Rru_A3370 0.18 -1.0 3,886,357 - Rru_A3370 0.18 -1.6 3,886,357 - Rru_A3370 0.18 +0.1 3,886,357 - Rru_A3370 0.18 -0.1 3,886,368 + Rru_A3370 0.19 -0.1 3,886,369 - Rru_A3370 0.19 -0.9 3,886,369 - Rru_A3370 0.19 -0.4 3,886,369 - Rru_A3370 0.19 -0.0 3,886,762 - Rru_A3370 0.65 +0.3 3,886,762 - Rru_A3370 0.65 +0.8 3,886,779 + Rru_A3370 0.67 +0.2 3,886,779 + Rru_A3370 0.67 +0.4 3,886,818 + Rru_A3370 0.72 +1.4 3,886,818 + Rru_A3370 0.72 +2.1 3,886,819 - Rru_A3370 0.72 -0.4 3,886,819 - Rru_A3370 0.72 +0.3 3,886,860 + Rru_A3370 0.77 -0.3 3,886,861 - Rru_A3370 0.77 -1.3 3,886,861 - Rru_A3370 0.77 -0.8 3,886,861 - Rru_A3370 0.77 +0.1 3,887,021 + +0.4
Or see this region's nucleotide sequence