Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3298

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3296 and Rru_A3297 are separated by 177 nucleotidesRru_A3297 and Rru_A3298 overlap by 8 nucleotidesRru_A3298 and Rru_A3299 are separated by 57 nucleotides Rru_A3296: Rru_A3296 - PAS/PAC Sensor Signal Transduction Histidine Kinase (NCBI), at 3,791,931 to 3,793,883 _A3296 Rru_A3297: Rru_A3297 - hypothetical protein (NCBI), at 3,794,061 to 3,794,816 _A3297 Rru_A3298: Rru_A3298 - hypothetical protein (NCBI), at 3,794,809 to 3,795,162 _A3298 Rru_A3299: Rru_A3299 - Glycoside hydrolase, family 3-like (NCBI), at 3,795,220 to 3,797,370 _A3299 Position (kb) 3794 3795 3796Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3793.853 kb on + strandat 3793.853 kb on + strandat 3793.853 kb on + strandat 3793.881 kb on + strandat 3793.882 kb on - strandat 3793.882 kb on - strandat 3793.901 kb on + strandat 3793.902 kb on - strandat 3794.018 kb on + strandat 3794.171 kb on + strand, within Rru_A3297at 3794.171 kb on + strand, within Rru_A3297at 3794.511 kb on + strand, within Rru_A3297at 3794.512 kb on - strand, within Rru_A3297at 3794.512 kb on - strand, within Rru_A3297at 3794.512 kb on - strand, within Rru_A3297at 3794.512 kb on - strand, within Rru_A3297at 3794.634 kb on + strand, within Rru_A3297at 3794.634 kb on + strand, within Rru_A3297at 3794.747 kb on - strandat 3795.160 kb on + strandat 3795.247 kb on - strandat 3795.650 kb on + strand, within Rru_A3299at 3795.650 kb on + strand, within Rru_A3299at 3795.650 kb on + strand, within Rru_A3299at 3795.650 kb on + strand, within Rru_A3299at 3795.651 kb on - strand, within Rru_A3299at 3795.651 kb on - strand, within Rru_A3299at 3795.651 kb on - strand, within Rru_A3299at 3795.651 kb on - strand, within Rru_A3299at 3795.651 kb on - strand, within Rru_A3299at 3795.651 kb on - strand, within Rru_A3299at 3795.651 kb on - strand, within Rru_A3299at 3795.651 kb on - strand, within Rru_A3299at 3795.662 kb on + strand, within Rru_A3299at 3795.662 kb on + strand, within Rru_A3299at 3795.663 kb on - strand, within Rru_A3299at 3796.113 kb on + strand, within Rru_A3299at 3796.113 kb on + strand, within Rru_A3299

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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3,793,853 + -1.0
3,793,853 + -0.2
3,793,853 + -0.0
3,793,881 + -0.5
3,793,882 - -0.1
3,793,882 - -0.5
3,793,901 + -0.1
3,793,902 - +0.3
3,794,018 + +0.7
3,794,171 + Rru_A3297 0.15 +0.6
3,794,171 + Rru_A3297 0.15 -1.0
3,794,511 + Rru_A3297 0.60 -1.9
3,794,512 - Rru_A3297 0.60 -0.8
3,794,512 - Rru_A3297 0.60 +0.0
3,794,512 - Rru_A3297 0.60 +0.1
3,794,512 - Rru_A3297 0.60 -0.2
3,794,634 + Rru_A3297 0.76 +0.6
3,794,634 + Rru_A3297 0.76 +0.1
3,794,747 - +0.4
3,795,160 + -5.2
3,795,247 - -2.3
3,795,650 + Rru_A3299 0.20 -0.4
3,795,650 + Rru_A3299 0.20 -2.5
3,795,650 + Rru_A3299 0.20 +1.1
3,795,650 + Rru_A3299 0.20 -0.3
3,795,651 - Rru_A3299 0.20 -1.4
3,795,651 - Rru_A3299 0.20 -0.8
3,795,651 - Rru_A3299 0.20 -1.1
3,795,651 - Rru_A3299 0.20 -0.1
3,795,651 - Rru_A3299 0.20 +1.2
3,795,651 - Rru_A3299 0.20 +0.3
3,795,651 - Rru_A3299 0.20 -0.1
3,795,651 - Rru_A3299 0.20 -1.1
3,795,662 + Rru_A3299 0.21 -0.4
3,795,662 + Rru_A3299 0.21 -0.2
3,795,663 - Rru_A3299 0.21 -3.2
3,796,113 + Rru_A3299 0.42 -0.0
3,796,113 + Rru_A3299 0.42 +0.3

Or see this region's nucleotide sequence