Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2982

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2981 and Rru_A2982 are separated by 69 nucleotidesRru_A2982 and Rru_A2983 are separated by 181 nucleotides Rru_A2981: Rru_A2981 - 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide (NCBI), at 3,432,473 to 3,433,426 _A2981 Rru_A2982: Rru_A2982 - O-methyltransferase, family 2 (NCBI), at 3,433,496 to 3,434,686 _A2982 Rru_A2983: Rru_A2983 - Polyprenyl synthetase (NCBI), at 3,434,868 to 3,435,737 _A2983 Position (kb) 3433 3434 3435Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3432.717 kb on + strand, within Rru_A2981at 3432.717 kb on + strand, within Rru_A2981at 3432.717 kb on + strand, within Rru_A2981at 3432.717 kb on + strand, within Rru_A2981at 3432.717 kb on + strand, within Rru_A2981at 3432.718 kb on - strand, within Rru_A2981at 3432.718 kb on - strand, within Rru_A2981at 3432.718 kb on - strand, within Rru_A2981at 3432.770 kb on - strand, within Rru_A2981at 3432.770 kb on - strand, within Rru_A2981at 3432.813 kb on + strand, within Rru_A2981at 3432.820 kb on + strand, within Rru_A2981at 3432.884 kb on - strand, within Rru_A2981at 3432.884 kb on - strand, within Rru_A2981at 3432.884 kb on - strand, within Rru_A2981at 3433.234 kb on - strand, within Rru_A2981at 3433.427 kb on - strandat 3433.497 kb on + strandat 3433.616 kb on + strand, within Rru_A2982at 3433.616 kb on + strand, within Rru_A2982at 3433.698 kb on + strand, within Rru_A2982at 3433.699 kb on - strand, within Rru_A2982at 3433.710 kb on + strand, within Rru_A2982at 3433.711 kb on - strand, within Rru_A2982at 3434.193 kb on + strand, within Rru_A2982at 3434.193 kb on + strand, within Rru_A2982at 3434.193 kb on + strand, within Rru_A2982at 3434.193 kb on + strand, within Rru_A2982at 3434.268 kb on + strand, within Rru_A2982at 3434.521 kb on - strand, within Rru_A2982at 3434.604 kb on + strandat 3434.604 kb on + strandat 3434.605 kb on - strandat 3434.925 kb on - strandat 3435.128 kb on - strand, within Rru_A2983at 3435.436 kb on + strand, within Rru_A2983

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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3,432,717 + Rru_A2981 0.26 -3.0
3,432,717 + Rru_A2981 0.26 -2.2
3,432,717 + Rru_A2981 0.26 +1.0
3,432,717 + Rru_A2981 0.26 -3.6
3,432,717 + Rru_A2981 0.26 -3.6
3,432,718 - Rru_A2981 0.26 -2.9
3,432,718 - Rru_A2981 0.26 -1.1
3,432,718 - Rru_A2981 0.26 -1.8
3,432,770 - Rru_A2981 0.31 -1.5
3,432,770 - Rru_A2981 0.31 -2.7
3,432,813 + Rru_A2981 0.36 -1.3
3,432,820 + Rru_A2981 0.36 -1.5
3,432,884 - Rru_A2981 0.43 -1.0
3,432,884 - Rru_A2981 0.43 -3.5
3,432,884 - Rru_A2981 0.43 -2.6
3,433,234 - Rru_A2981 0.80 -1.1
3,433,427 - +0.8
3,433,497 + -2.5
3,433,616 + Rru_A2982 0.10 -1.9
3,433,616 + Rru_A2982 0.10 -2.7
3,433,698 + Rru_A2982 0.17 -1.5
3,433,699 - Rru_A2982 0.17 -4.1
3,433,710 + Rru_A2982 0.18 -0.8
3,433,711 - Rru_A2982 0.18 -1.8
3,434,193 + Rru_A2982 0.59 -0.8
3,434,193 + Rru_A2982 0.59 +1.2
3,434,193 + Rru_A2982 0.59 -1.0
3,434,193 + Rru_A2982 0.59 -3.4
3,434,268 + Rru_A2982 0.65 -0.5
3,434,521 - Rru_A2982 0.86 -2.1
3,434,604 + -0.8
3,434,604 + -0.3
3,434,605 - -0.3
3,434,925 - +2.2
3,435,128 - Rru_A2983 0.30 -2.8
3,435,436 + Rru_A2983 0.65 -1.8

Or see this region's nucleotide sequence