Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2740

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2739 and Rru_A2740 overlap by 4 nucleotidesRru_A2740 and Rru_A2741 overlap by 4 nucleotides Rru_A2739: Rru_A2739 - hypothetical protein (NCBI), at 3,169,526 to 3,171,988 _A2739 Rru_A2740: Rru_A2740 - UDP-N-acetylglucosamine 2-epimerase (NCBI), at 3,171,985 to 3,173,082 _A2740 Rru_A2741: Rru_A2741 - Polysaccharide biosynthesis protein CapD (NCBI), at 3,173,079 to 3,174,146 _A2741 Position (kb) 3171 3172 3173 3174Strain fitness (log2 ratio) -3 -2 -1 0 1at 3171.011 kb on - strand, within Rru_A2739at 3171.012 kb on + strand, within Rru_A2739at 3171.012 kb on + strand, within Rru_A2739at 3171.012 kb on + strand, within Rru_A2739at 3171.012 kb on + strand, within Rru_A2739at 3171.012 kb on + strand, within Rru_A2739at 3171.013 kb on - strand, within Rru_A2739at 3171.155 kb on + strand, within Rru_A2739at 3171.155 kb on + strand, within Rru_A2739at 3171.155 kb on + strand, within Rru_A2739at 3171.155 kb on + strand, within Rru_A2739at 3171.155 kb on + strand, within Rru_A2739at 3171.156 kb on - strand, within Rru_A2739at 3171.156 kb on - strand, within Rru_A2739at 3171.156 kb on - strand, within Rru_A2739at 3171.156 kb on - strand, within Rru_A2739at 3171.156 kb on - strand, within Rru_A2739at 3171.156 kb on - strand, within Rru_A2739at 3171.198 kb on - strand, within Rru_A2739at 3171.216 kb on + strand, within Rru_A2739at 3171.216 kb on + strand, within Rru_A2739at 3171.217 kb on - strand, within Rru_A2739at 3171.261 kb on + strand, within Rru_A2739at 3171.262 kb on - strand, within Rru_A2739at 3171.262 kb on - strand, within Rru_A2739at 3171.262 kb on - strand, within Rru_A2739at 3171.262 kb on - strand, within Rru_A2739at 3171.262 kb on - strand, within Rru_A2739at 3171.265 kb on - strand, within Rru_A2739at 3171.265 kb on - strand, within Rru_A2739at 3171.265 kb on - strand, within Rru_A2739at 3171.265 kb on - strand, within Rru_A2739at 3171.265 kb on - strand, within Rru_A2739at 3171.265 kb on - strand, within Rru_A2739at 3171.465 kb on + strand, within Rru_A2739at 3171.466 kb on - strand, within Rru_A2739at 3171.466 kb on - strand, within Rru_A2739at 3171.625 kb on + strand, within Rru_A2739at 3171.626 kb on - strand, within Rru_A2739at 3171.654 kb on + strand, within Rru_A2739at 3171.654 kb on + strand, within Rru_A2739at 3171.654 kb on + strand, within Rru_A2739at 3171.655 kb on - strand, within Rru_A2739at 3171.655 kb on - strand, within Rru_A2739at 3171.697 kb on + strand, within Rru_A2739at 3171.897 kb on + strandat 3171.898 kb on - strandat 3171.898 kb on - strandat 3172.053 kb on + strandat 3172.053 kb on + strandat 3172.054 kb on - strandat 3172.055 kb on + strandat 3172.055 kb on + strandat 3172.055 kb on + strandat 3172.056 kb on - strandat 3172.056 kb on - strandat 3172.056 kb on - strandat 3172.056 kb on - strandat 3172.056 kb on - strandat 3172.143 kb on + strand, within Rru_A2740at 3172.143 kb on + strand, within Rru_A2740at 3172.144 kb on - strand, within Rru_A2740at 3172.144 kb on - strand, within Rru_A2740at 3172.144 kb on - strand, within Rru_A2740at 3172.144 kb on - strand, within Rru_A2740at 3172.444 kb on + strand, within Rru_A2740at 3172.445 kb on - strand, within Rru_A2740at 3172.445 kb on - strand, within Rru_A2740at 3172.445 kb on - strand, within Rru_A2740at 3172.650 kb on + strand, within Rru_A2740at 3172.651 kb on - strand, within Rru_A2740at 3172.652 kb on + strand, within Rru_A2740at 3172.652 kb on + strand, within Rru_A2740at 3172.652 kb on + strand, within Rru_A2740at 3172.744 kb on - strand, within Rru_A2740at 3172.778 kb on + strand, within Rru_A2740at 3172.778 kb on + strand, within Rru_A2740at 3172.778 kb on + strand, within Rru_A2740at 3172.779 kb on - strand, within Rru_A2740at 3172.985 kb on + strandat 3172.986 kb on - strandat 3172.986 kb on - strandat 3173.191 kb on + strand, within Rru_A2741at 3173.191 kb on + strand, within Rru_A2741at 3173.192 kb on - strand, within Rru_A2741at 3173.192 kb on - strand, within Rru_A2741at 3173.192 kb on - strand, within Rru_A2741at 3173.192 kb on - strand, within Rru_A2741at 3173.192 kb on - strand, within Rru_A2741at 3173.192 kb on - strand, within Rru_A2741at 3173.260 kb on + strand, within Rru_A2741at 3173.260 kb on + strand, within Rru_A2741at 3173.261 kb on - strand, within Rru_A2741at 3173.425 kb on + strand, within Rru_A2741at 3173.425 kb on + strand, within Rru_A2741at 3173.425 kb on + strand, within Rru_A2741at 3173.425 kb on + strand, within Rru_A2741at 3173.425 kb on + strand, within Rru_A2741at 3173.425 kb on + strand, within Rru_A2741at 3173.425 kb on + strand, within Rru_A2741at 3173.425 kb on + strand, within Rru_A2741at 3173.425 kb on + strand, within Rru_A2741at 3173.425 kb on + strand, within Rru_A2741at 3173.426 kb on - strand, within Rru_A2741at 3173.426 kb on - strand, within Rru_A2741at 3173.426 kb on - strand, within Rru_A2741at 3173.426 kb on - strand, within Rru_A2741at 3173.426 kb on - strand, within Rru_A2741at 3173.426 kb on - strand, within Rru_A2741at 3173.426 kb on - strand, within Rru_A2741at 3173.426 kb on - strand, within Rru_A2741at 3173.426 kb on - strand, within Rru_A2741at 3173.599 kb on + strand, within Rru_A2741at 3173.599 kb on + strand, within Rru_A2741at 3173.771 kb on + strand, within Rru_A2741at 3173.771 kb on + strand, within Rru_A2741at 3173.772 kb on - strand, within Rru_A2741at 3173.772 kb on - strand, within Rru_A2741at 3173.772 kb on - strand, within Rru_A2741at 3173.809 kb on + strand, within Rru_A2741at 3173.819 kb on - strand, within Rru_A2741at 3173.819 kb on - strand, within Rru_A2741at 3173.950 kb on + strand, within Rru_A2741at 3173.951 kb on - strand, within Rru_A2741at 3173.992 kb on + strand, within Rru_A2741at 3173.992 kb on + strand, within Rru_A2741at 3173.992 kb on + strand, within Rru_A2741at 3173.992 kb on + strand, within Rru_A2741at 3173.993 kb on - strand, within Rru_A2741at 3173.993 kb on - strand, within Rru_A2741at 3173.993 kb on - strand, within Rru_A2741at 3173.993 kb on - strand, within Rru_A2741at 3173.993 kb on - strand, within Rru_A2741at 3173.993 kb on - strand, within Rru_A2741at 3174.018 kb on - strand, within Rru_A2741

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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3,171,011 - Rru_A2739 0.60 -1.3
3,171,012 + Rru_A2739 0.60 -0.4
3,171,012 + Rru_A2739 0.60 -1.1
3,171,012 + Rru_A2739 0.60 -0.5
3,171,012 + Rru_A2739 0.60 -0.8
3,171,012 + Rru_A2739 0.60 +0.8
3,171,013 - Rru_A2739 0.60 +0.4
3,171,155 + Rru_A2739 0.66 +0.4
3,171,155 + Rru_A2739 0.66 +0.3
3,171,155 + Rru_A2739 0.66 +0.5
3,171,155 + Rru_A2739 0.66 -0.4
3,171,155 + Rru_A2739 0.66 -0.3
3,171,156 - Rru_A2739 0.66 -0.2
3,171,156 - Rru_A2739 0.66 +0.1
3,171,156 - Rru_A2739 0.66 -2.5
3,171,156 - Rru_A2739 0.66 +0.2
3,171,156 - Rru_A2739 0.66 +0.4
3,171,156 - Rru_A2739 0.66 +0.3
3,171,198 - Rru_A2739 0.68 +0.9
3,171,216 + Rru_A2739 0.69 -0.1
3,171,216 + Rru_A2739 0.69 +1.1
3,171,217 - Rru_A2739 0.69 -0.1
3,171,261 + Rru_A2739 0.70 +0.6
3,171,262 - Rru_A2739 0.70 -2.7
3,171,262 - Rru_A2739 0.70 +0.1
3,171,262 - Rru_A2739 0.70 -0.1
3,171,262 - Rru_A2739 0.70 -0.7
3,171,262 - Rru_A2739 0.70 -0.1
3,171,265 - Rru_A2739 0.71 -0.4
3,171,265 - Rru_A2739 0.71 +0.6
3,171,265 - Rru_A2739 0.71 -0.1
3,171,265 - Rru_A2739 0.71 -0.9
3,171,265 - Rru_A2739 0.71 -0.1
3,171,265 - Rru_A2739 0.71 +0.3
3,171,465 + Rru_A2739 0.79 -0.1
3,171,466 - Rru_A2739 0.79 -0.3
3,171,466 - Rru_A2739 0.79 -1.8
3,171,625 + Rru_A2739 0.85 +1.2
3,171,626 - Rru_A2739 0.85 +0.8
3,171,654 + Rru_A2739 0.86 -0.8
3,171,654 + Rru_A2739 0.86 -1.5
3,171,654 + Rru_A2739 0.86 -0.4
3,171,655 - Rru_A2739 0.86 +0.3
3,171,655 - Rru_A2739 0.86 -0.7
3,171,697 + Rru_A2739 0.88 -0.0
3,171,897 + -0.9
3,171,898 - -1.2
3,171,898 - -0.1
3,172,053 + +1.1
3,172,053 + +1.5
3,172,054 - +0.1
3,172,055 + -0.7
3,172,055 + -0.1
3,172,055 + -0.5
3,172,056 - -1.5
3,172,056 - -0.2
3,172,056 - +0.5
3,172,056 - -0.2
3,172,056 - -1.1
3,172,143 + Rru_A2740 0.14 -0.3
3,172,143 + Rru_A2740 0.14 +0.4
3,172,144 - Rru_A2740 0.14 +0.3
3,172,144 - Rru_A2740 0.14 +0.5
3,172,144 - Rru_A2740 0.14 -1.0
3,172,144 - Rru_A2740 0.14 +0.9
3,172,444 + Rru_A2740 0.42 +1.5
3,172,445 - Rru_A2740 0.42 -1.5
3,172,445 - Rru_A2740 0.42 +1.1
3,172,445 - Rru_A2740 0.42 +0.1
3,172,650 + Rru_A2740 0.61 -1.6
3,172,651 - Rru_A2740 0.61 +0.3
3,172,652 + Rru_A2740 0.61 +0.9
3,172,652 + Rru_A2740 0.61 +0.5
3,172,652 + Rru_A2740 0.61 +0.3
3,172,744 - Rru_A2740 0.69 +0.1
3,172,778 + Rru_A2740 0.72 +0.1
3,172,778 + Rru_A2740 0.72 +0.5
3,172,778 + Rru_A2740 0.72 -0.0
3,172,779 - Rru_A2740 0.72 +0.4
3,172,985 + +1.3
3,172,986 - -0.4
3,172,986 - +0.0
3,173,191 + Rru_A2741 0.10 -0.2
3,173,191 + Rru_A2741 0.10 -0.1
3,173,192 - Rru_A2741 0.11 -0.7
3,173,192 - Rru_A2741 0.11 -0.1
3,173,192 - Rru_A2741 0.11 -0.2
3,173,192 - Rru_A2741 0.11 -2.0
3,173,192 - Rru_A2741 0.11 +0.5
3,173,192 - Rru_A2741 0.11 -0.0
3,173,260 + Rru_A2741 0.17 +0.6
3,173,260 + Rru_A2741 0.17 -0.6
3,173,261 - Rru_A2741 0.17 -0.0
3,173,425 + Rru_A2741 0.32 +0.5
3,173,425 + Rru_A2741 0.32 -1.4
3,173,425 + Rru_A2741 0.32 +0.2
3,173,425 + Rru_A2741 0.32 -0.6
3,173,425 + Rru_A2741 0.32 +0.4
3,173,425 + Rru_A2741 0.32 -0.6
3,173,425 + Rru_A2741 0.32 -3.2
3,173,425 + Rru_A2741 0.32 -0.6
3,173,425 + Rru_A2741 0.32 -2.1
3,173,425 + Rru_A2741 0.32 -0.2
3,173,426 - Rru_A2741 0.32 -0.7
3,173,426 - Rru_A2741 0.32 -0.3
3,173,426 - Rru_A2741 0.32 +0.2
3,173,426 - Rru_A2741 0.32 +0.3
3,173,426 - Rru_A2741 0.32 +0.2
3,173,426 - Rru_A2741 0.32 +0.4
3,173,426 - Rru_A2741 0.32 -0.4
3,173,426 - Rru_A2741 0.32 -0.3
3,173,426 - Rru_A2741 0.32 +0.9
3,173,599 + Rru_A2741 0.49 -1.0
3,173,599 + Rru_A2741 0.49 -3.0
3,173,771 + Rru_A2741 0.65 +0.4
3,173,771 + Rru_A2741 0.65 -0.2
3,173,772 - Rru_A2741 0.65 -2.0
3,173,772 - Rru_A2741 0.65 -0.7
3,173,772 - Rru_A2741 0.65 -2.0
3,173,809 + Rru_A2741 0.68 +0.2
3,173,819 - Rru_A2741 0.69 +0.7
3,173,819 - Rru_A2741 0.69 -0.4
3,173,950 + Rru_A2741 0.82 -0.9
3,173,951 - Rru_A2741 0.82 -0.9
3,173,992 + Rru_A2741 0.85 +0.4
3,173,992 + Rru_A2741 0.85 +0.2
3,173,992 + Rru_A2741 0.85 +1.1
3,173,992 + Rru_A2741 0.85 +0.8
3,173,993 - Rru_A2741 0.86 -1.8
3,173,993 - Rru_A2741 0.86 +0.3
3,173,993 - Rru_A2741 0.86 -0.0
3,173,993 - Rru_A2741 0.86 -0.3
3,173,993 - Rru_A2741 0.86 -0.3
3,173,993 - Rru_A2741 0.86 -0.5
3,174,018 - Rru_A2741 0.88 +0.1

Or see this region's nucleotide sequence