Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1797

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1796 and Rru_A1797 are separated by 112 nucleotidesRru_A1797 and Rru_A1798 are separated by 196 nucleotides Rru_A1796: Rru_A1796 - Valyl-tRNA synthetase, class Ia (NCBI), at 2,088,061 to 2,090,700 _A1796 Rru_A1797: Rru_A1797 - hypothetical protein (NCBI), at 2,090,813 to 2,091,439 _A1797 Rru_A1798: Rru_A1798 - Type I secretion outer membrane protein, TolC (NCBI), at 2,091,636 to 2,093,252 _A1798 Position (kb) 2090 2091 2092Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2090.731 kb on - strandat 2090.875 kb on + strandat 2090.875 kb on + strandat 2090.876 kb on - strand, within Rru_A1797at 2090.876 kb on - strand, within Rru_A1797at 2090.876 kb on - strand, within Rru_A1797at 2090.876 kb on - strand, within Rru_A1797at 2090.877 kb on + strand, within Rru_A1797at 2090.877 kb on + strand, within Rru_A1797at 2090.878 kb on - strand, within Rru_A1797at 2090.878 kb on - strand, within Rru_A1797at 2090.878 kb on - strand, within Rru_A1797at 2090.878 kb on - strand, within Rru_A1797at 2090.878 kb on - strand, within Rru_A1797at 2090.878 kb on - strand, within Rru_A1797at 2091.205 kb on + strand, within Rru_A1797at 2091.205 kb on + strand, within Rru_A1797at 2091.205 kb on + strand, within Rru_A1797at 2091.205 kb on + strand, within Rru_A1797at 2091.205 kb on + strand, within Rru_A1797at 2091.511 kb on - strandat 2091.522 kb on + strandat 2091.522 kb on + strandat 2091.523 kb on - strandat 2091.523 kb on - strandat 2091.523 kb on - strandat 2091.554 kb on + strandat 2091.554 kb on + strandat 2091.554 kb on + strandat 2091.555 kb on - strandat 2091.638 kb on - strandat 2091.683 kb on + strandat 2091.683 kb on + strandat 2091.683 kb on + strandat 2091.684 kb on - strandat 2091.684 kb on - strandat 2091.781 kb on + strandat 2091.782 kb on - strandat 2091.782 kb on - strandat 2091.782 kb on - strandat 2091.782 kb on - strandat 2091.782 kb on - strandat 2091.782 kb on - strandat 2091.800 kb on - strand, within Rru_A1798at 2091.862 kb on + strand, within Rru_A1798at 2091.863 kb on - strand, within Rru_A1798at 2091.863 kb on - strand, within Rru_A1798at 2092.022 kb on + strand, within Rru_A1798at 2092.022 kb on + strand, within Rru_A1798at 2092.022 kb on + strand, within Rru_A1798at 2092.023 kb on - strand, within Rru_A1798at 2092.023 kb on - strand, within Rru_A1798at 2092.023 kb on - strand, within Rru_A1798at 2092.024 kb on + strand, within Rru_A1798at 2092.025 kb on - strand, within Rru_A1798at 2092.025 kb on - strand, within Rru_A1798at 2092.025 kb on - strand, within Rru_A1798at 2092.025 kb on - strand, within Rru_A1798at 2092.159 kb on + strand, within Rru_A1798at 2092.159 kb on + strand, within Rru_A1798at 2092.159 kb on + strand, within Rru_A1798at 2092.177 kb on + strand, within Rru_A1798at 2092.225 kb on + strand, within Rru_A1798at 2092.225 kb on + strand, within Rru_A1798at 2092.247 kb on + strand, within Rru_A1798at 2092.247 kb on + strand, within Rru_A1798at 2092.259 kb on + strand, within Rru_A1798at 2092.260 kb on - strand, within Rru_A1798at 2092.260 kb on - strand, within Rru_A1798at 2092.261 kb on + strand, within Rru_A1798at 2092.262 kb on - strand, within Rru_A1798at 2092.340 kb on - strand, within Rru_A1798at 2092.340 kb on - strand, within Rru_A1798at 2092.418 kb on - strand, within Rru_A1798

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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2,090,731 - +0.1
2,090,875 + -0.4
2,090,875 + -0.5
2,090,876 - Rru_A1797 0.10 -0.2
2,090,876 - Rru_A1797 0.10 -0.8
2,090,876 - Rru_A1797 0.10 -0.7
2,090,876 - Rru_A1797 0.10 +0.7
2,090,877 + Rru_A1797 0.10 +1.6
2,090,877 + Rru_A1797 0.10 -1.2
2,090,878 - Rru_A1797 0.10 +0.1
2,090,878 - Rru_A1797 0.10 -0.6
2,090,878 - Rru_A1797 0.10 -1.2
2,090,878 - Rru_A1797 0.10 -0.4
2,090,878 - Rru_A1797 0.10 -0.5
2,090,878 - Rru_A1797 0.10 -1.1
2,091,205 + Rru_A1797 0.63 -0.2
2,091,205 + Rru_A1797 0.63 +0.2
2,091,205 + Rru_A1797 0.63 -0.4
2,091,205 + Rru_A1797 0.63 -1.7
2,091,205 + Rru_A1797 0.63 -1.4
2,091,511 - +0.2
2,091,522 + -0.4
2,091,522 + -1.3
2,091,523 - +1.1
2,091,523 - +0.3
2,091,523 - +0.1
2,091,554 + -0.9
2,091,554 + +0.3
2,091,554 + -0.3
2,091,555 - +0.6
2,091,638 - +0.9
2,091,683 + +0.8
2,091,683 + -2.0
2,091,683 + -2.3
2,091,684 - +0.6
2,091,684 - +0.7
2,091,781 + +0.9
2,091,782 - +0.1
2,091,782 - +0.3
2,091,782 - +0.2
2,091,782 - +0.3
2,091,782 - -0.6
2,091,782 - +0.1
2,091,800 - Rru_A1798 0.10 -2.9
2,091,862 + Rru_A1798 0.14 +2.1
2,091,863 - Rru_A1798 0.14 -2.9
2,091,863 - Rru_A1798 0.14 +3.2
2,092,022 + Rru_A1798 0.24 -1.1
2,092,022 + Rru_A1798 0.24 +1.0
2,092,022 + Rru_A1798 0.24 +1.3
2,092,023 - Rru_A1798 0.24 +0.7
2,092,023 - Rru_A1798 0.24 -2.3
2,092,023 - Rru_A1798 0.24 +0.6
2,092,024 + Rru_A1798 0.24 +1.6
2,092,025 - Rru_A1798 0.24 +0.2
2,092,025 - Rru_A1798 0.24 +0.6
2,092,025 - Rru_A1798 0.24 +1.9
2,092,025 - Rru_A1798 0.24 -1.9
2,092,159 + Rru_A1798 0.32 +1.7
2,092,159 + Rru_A1798 0.32 -0.3
2,092,159 + Rru_A1798 0.32 +1.2
2,092,177 + Rru_A1798 0.33 -0.4
2,092,225 + Rru_A1798 0.36 -3.4
2,092,225 + Rru_A1798 0.36 +0.8
2,092,247 + Rru_A1798 0.38 -0.4
2,092,247 + Rru_A1798 0.38 +1.9
2,092,259 + Rru_A1798 0.39 -2.8
2,092,260 - Rru_A1798 0.39 +0.8
2,092,260 - Rru_A1798 0.39 +0.4
2,092,261 + Rru_A1798 0.39 -1.1
2,092,262 - Rru_A1798 0.39 +1.0
2,092,340 - Rru_A1798 0.44 +3.5
2,092,340 - Rru_A1798 0.44 -1.3
2,092,418 - Rru_A1798 0.48 +1.6

Or see this region's nucleotide sequence