Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0892 and Rru_A0893 are separated by 51 nucleotides Rru_A0893 and Rru_A0894 are separated by 96 nucleotides Rru_A0894 and Rru_A0895 are separated by 315 nucleotides Rru_A0895 and Rru_A0896 are separated by 236 nucleotides
Rru_A0892: Rru_A0892 - stress protein (NCBI), at 1,068,315 to 1,069,571
_A0892
Rru_A0893: Rru_A0893 - stress protein (NCBI), at 1,069,623 to 1,070,207
_A0893
Rru_A0894: Rru_A0894 - stress protein (NCBI), at 1,070,304 to 1,070,882
_A0894
Rru_A0895: Rru_A0895 - putative transcriptional regulator (NCBI), at 1,071,198 to 1,071,530
_A0895
Rru_A0896: Rru_A0896 - hypothetical protein (NCBI), at 1,071,767 to 1,072,774
_A0896
Position (kb)
1070
1071 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1069.400 kb on - strand, within Rru_A0892 at 1069.538 kb on + strand at 1069.539 kb on - strand at 1069.539 kb on - strand at 1069.962 kb on - strand, within Rru_A0893 at 1070.175 kb on + strand at 1070.175 kb on + strand at 1070.176 kb on - strand at 1070.176 kb on - strand at 1070.200 kb on - strand at 1070.437 kb on + strand, within Rru_A0894 at 1070.438 kb on - strand, within Rru_A0894 at 1070.456 kb on - strand, within Rru_A0894 at 1070.695 kb on + strand, within Rru_A0894 at 1070.951 kb on + strand at 1070.951 kb on + strand at 1070.952 kb on - strand at 1070.952 kb on - strand at 1070.980 kb on - strand at 1071.006 kb on + strand at 1071.103 kb on + strand at 1071.103 kb on + strand at 1071.104 kb on - strand at 1071.104 kb on - strand at 1071.130 kb on + strand at 1071.322 kb on + strand, within Rru_A0895 at 1071.322 kb on + strand, within Rru_A0895 at 1071.322 kb on + strand, within Rru_A0895 at 1071.322 kb on + strand, within Rru_A0895 at 1071.322 kb on + strand, within Rru_A0895 at 1071.322 kb on + strand, within Rru_A0895 at 1071.322 kb on + strand, within Rru_A0895 at 1071.322 kb on + strand, within Rru_A0895 at 1071.322 kb on + strand, within Rru_A0895 at 1071.322 kb on + strand, within Rru_A0895 at 1071.323 kb on - strand, within Rru_A0895 at 1071.323 kb on - strand, within Rru_A0895 at 1071.323 kb on - strand, within Rru_A0895 at 1071.323 kb on - strand, within Rru_A0895 at 1071.323 kb on - strand, within Rru_A0895 at 1071.323 kb on - strand, within Rru_A0895 at 1071.323 kb on - strand, within Rru_A0895 at 1071.599 kb on + strand at 1071.607 kb on + strand at 1071.607 kb on + strand at 1071.608 kb on - strand at 1071.611 kb on - strand at 1071.611 kb on - strand at 1071.754 kb on + strand at 1071.755 kb on - strand at 1071.767 kb on - strand at 1071.767 kb on - strand at 1071.767 kb on - strand at 1071.803 kb on + strand at 1071.804 kb on - strand at 1071.821 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 1,069,400 - Rru_A0892 0.86 -1.7 1,069,538 + -1.5 1,069,539 - -0.9 1,069,539 - -3.6 1,069,962 - Rru_A0893 0.58 +0.5 1,070,175 + +0.3 1,070,175 + -1.7 1,070,176 - -0.0 1,070,176 - -0.7 1,070,200 - -0.5 1,070,437 + Rru_A0894 0.23 -2.3 1,070,438 - Rru_A0894 0.23 +0.1 1,070,456 - Rru_A0894 0.26 +0.5 1,070,695 + Rru_A0894 0.68 +0.0 1,070,951 + +0.3 1,070,951 + -1.6 1,070,952 - -0.0 1,070,952 - +0.2 1,070,980 - +0.3 1,071,006 + -0.1 1,071,103 + +0.0 1,071,103 + -1.6 1,071,104 - +0.8 1,071,104 - +0.0 1,071,130 + +0.0 1,071,322 + Rru_A0895 0.37 +1.0 1,071,322 + Rru_A0895 0.37 +0.1 1,071,322 + Rru_A0895 0.37 +0.8 1,071,322 + Rru_A0895 0.37 +0.4 1,071,322 + Rru_A0895 0.37 +0.9 1,071,322 + Rru_A0895 0.37 -3.5 1,071,322 + Rru_A0895 0.37 -1.1 1,071,322 + Rru_A0895 0.37 -0.3 1,071,322 + Rru_A0895 0.37 -0.2 1,071,322 + Rru_A0895 0.37 +1.4 1,071,323 - Rru_A0895 0.38 +0.5 1,071,323 - Rru_A0895 0.38 +0.0 1,071,323 - Rru_A0895 0.38 +0.1 1,071,323 - Rru_A0895 0.38 -0.2 1,071,323 - Rru_A0895 0.38 -3.1 1,071,323 - Rru_A0895 0.38 +0.0 1,071,323 - Rru_A0895 0.38 -0.0 1,071,599 + +0.3 1,071,607 + -0.5 1,071,607 + -0.2 1,071,608 - -0.3 1,071,611 - +0.9 1,071,611 - +0.6 1,071,754 + -0.5 1,071,755 - +0.0 1,071,767 - +0.2 1,071,767 - -0.6 1,071,767 - -1.1 1,071,803 + -0.1 1,071,804 - +0.9 1,071,821 - +0.8
Or see this region's nucleotide sequence