Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_AR0021 and Rru_AR0022 are separated by 118 nucleotides Rru_AR0022 and Rru_AR0023 are separated by 95 nucleotides Rru_AR0023 and Rru_A0771 are separated by 573 nucleotides
Rru_AR0021: Rru_AR0021 - 23S ribosomal RNA (NCBI), at 913,637 to 916,394
_AR0021
Rru_AR0022: Rru_AR0022 - 5S ribosomal RNA (NCBI), at 916,513 to 916,627
_AR0022
Rru_AR0023: Rru_AR0023 - tRNA-Met (NCBI), at 916,723 to 916,799
_AR0023
Rru_A0771: Rru_A0771 - hypothetical protein (NCBI), at 917,373 to 921,860
_A0771
Position (kb)
916
917 Strain fitness (log2 ratio)
-2
-1
0
1 at 916.471 kb on - strand at 916.612 kb on + strand, within Rru_AR0022 at 916.612 kb on + strand, within Rru_AR0022 at 916.612 kb on + strand, within Rru_AR0022 at 916.612 kb on + strand, within Rru_AR0022 at 916.612 kb on + strand, within Rru_AR0022 at 916.612 kb on + strand, within Rru_AR0022 at 916.643 kb on + strand at 916.689 kb on - strand at 916.805 kb on + strand at 916.805 kb on + strand at 916.806 kb on - strand at 916.851 kb on + strand at 916.851 kb on + strand at 916.851 kb on + strand at 916.851 kb on + strand at 916.852 kb on - strand at 916.854 kb on - strand at 916.854 kb on - strand at 916.871 kb on + strand at 916.880 kb on + strand at 916.880 kb on + strand at 916.881 kb on - strand at 916.881 kb on - strand at 916.881 kb on - strand at 916.979 kb on + strand at 916.980 kb on - strand at 916.989 kb on - strand at 917.052 kb on - strand at 917.116 kb on - strand at 917.117 kb on + strand at 917.257 kb on + strand at 917.266 kb on - strand at 917.309 kb on + strand at 917.309 kb on + strand at 917.343 kb on - strand at 917.498 kb on + strand at 917.499 kb on - strand at 917.553 kb on + strand at 917.554 kb on - strand at 917.592 kb on + strand at 917.609 kb on + strand at 917.609 kb on + strand at 917.609 kb on + strand at 917.628 kb on + strand at 917.629 kb on - strand at 917.647 kb on + strand at 917.669 kb on + strand at 917.669 kb on + strand at 917.670 kb on - strand at 917.672 kb on + strand at 917.673 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 916,471 - +0.6 916,612 + Rru_AR0022 0.86 +1.6 916,612 + Rru_AR0022 0.86 -0.5 916,612 + Rru_AR0022 0.86 -2.2 916,612 + Rru_AR0022 0.86 -2.1 916,612 + Rru_AR0022 0.86 -0.4 916,612 + Rru_AR0022 0.86 -0.0 916,643 + +0.1 916,689 - -0.7 916,805 + -0.1 916,805 + -0.7 916,806 - -2.0 916,851 + +0.6 916,851 + +0.6 916,851 + -1.3 916,851 + -0.6 916,852 - -0.7 916,854 - -1.6 916,854 - +0.1 916,871 + -0.1 916,880 + -0.3 916,880 + +0.9 916,881 - +1.7 916,881 - +1.6 916,881 - +0.5 916,979 + -1.7 916,980 - -0.9 916,989 - +1.0 917,052 - +0.0 917,116 - +0.1 917,117 + -0.2 917,257 + -0.7 917,266 - -0.8 917,309 + +0.1 917,309 + -0.1 917,343 - -0.7 917,498 + -0.0 917,499 - +0.4 917,553 + +0.7 917,554 - -2.0 917,592 + +0.0 917,609 + -0.0 917,609 + +0.5 917,609 + +0.8 917,628 + +0.1 917,629 - -0.1 917,647 + -1.4 917,669 + +0.8 917,669 + -0.1 917,670 - -0.6 917,672 + -0.1 917,673 - +0.4
Or see this region's nucleotide sequence