Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0705

Experiment: Hexanoic 21 mM; anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0704 and Rru_A0705 are separated by 191 nucleotidesRru_A0705 and Rru_A0706 are separated by 85 nucleotides Rru_A0704: Rru_A0704 - Molybdenum ABC transporter, periplasmic binding protein (NCBI), at 832,762 to 833,538 _A0704 Rru_A0705: Rru_A0705 - Glutaredoxin-related protein (NCBI), at 833,730 to 834,059 _A0705 Rru_A0706: Rru_A0706 - RarD protein (NCBI), at 834,145 to 835,077 _A0706 Position (kb) 833 834 835Strain fitness (log2 ratio) -3 -2 -1 0 1at 832.754 kb on + strandat 832.784 kb on + strandat 832.880 kb on + strand, within Rru_A0704at 832.881 kb on - strand, within Rru_A0704at 832.881 kb on - strand, within Rru_A0704at 832.881 kb on - strand, within Rru_A0704at 832.958 kb on + strand, within Rru_A0704at 832.959 kb on - strand, within Rru_A0704at 833.084 kb on + strand, within Rru_A0704at 833.085 kb on - strand, within Rru_A0704at 833.085 kb on - strand, within Rru_A0704at 833.273 kb on + strand, within Rru_A0704at 833.274 kb on - strand, within Rru_A0704at 833.274 kb on - strand, within Rru_A0704at 833.274 kb on - strand, within Rru_A0704at 833.274 kb on - strand, within Rru_A0704at 833.274 kb on - strand, within Rru_A0704at 833.274 kb on - strand, within Rru_A0704at 833.451 kb on + strand, within Rru_A0704at 833.452 kb on - strand, within Rru_A0704at 833.452 kb on - strand, within Rru_A0704at 833.533 kb on - strandat 833.614 kb on - strandat 834.107 kb on - strandat 834.191 kb on + strandat 834.299 kb on + strand, within Rru_A0706at 834.300 kb on - strand, within Rru_A0706at 834.300 kb on - strand, within Rru_A0706at 834.300 kb on - strand, within Rru_A0706at 834.530 kb on - strand, within Rru_A0706at 834.551 kb on + strand, within Rru_A0706at 834.552 kb on - strand, within Rru_A0706at 834.552 kb on - strand, within Rru_A0706at 834.722 kb on + strand, within Rru_A0706at 834.722 kb on + strand, within Rru_A0706at 834.722 kb on + strand, within Rru_A0706at 834.722 kb on + strand, within Rru_A0706at 834.723 kb on - strand, within Rru_A0706at 834.723 kb on - strand, within Rru_A0706at 834.723 kb on - strand, within Rru_A0706at 834.723 kb on - strand, within Rru_A0706at 834.723 kb on - strand, within Rru_A0706at 834.726 kb on - strand, within Rru_A0706at 834.886 kb on - strand, within Rru_A0706at 834.886 kb on - strand, within Rru_A0706at 834.886 kb on - strand, within Rru_A0706at 834.888 kb on + strand, within Rru_A0706at 834.888 kb on + strand, within Rru_A0706at 834.888 kb on + strand, within Rru_A0706at 834.888 kb on + strand, within Rru_A0706at 834.889 kb on - strand, within Rru_A0706at 834.889 kb on - strand, within Rru_A0706at 834.889 kb on - strand, within Rru_A0706at 834.993 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
remove
832,754 + -1.3
832,784 + -0.2
832,880 + Rru_A0704 0.15 -0.2
832,881 - Rru_A0704 0.15 +0.0
832,881 - Rru_A0704 0.15 -0.8
832,881 - Rru_A0704 0.15 +0.4
832,958 + Rru_A0704 0.25 -0.3
832,959 - Rru_A0704 0.25 +0.4
833,084 + Rru_A0704 0.41 +0.3
833,085 - Rru_A0704 0.42 -1.6
833,085 - Rru_A0704 0.42 -0.7
833,273 + Rru_A0704 0.66 -1.3
833,274 - Rru_A0704 0.66 +0.0
833,274 - Rru_A0704 0.66 -1.0
833,274 - Rru_A0704 0.66 -0.2
833,274 - Rru_A0704 0.66 +0.2
833,274 - Rru_A0704 0.66 -0.2
833,274 - Rru_A0704 0.66 +1.0
833,451 + Rru_A0704 0.89 +0.2
833,452 - Rru_A0704 0.89 -0.1
833,452 - Rru_A0704 0.89 -0.3
833,533 - -0.2
833,614 - -0.9
834,107 - +0.6
834,191 + -0.4
834,299 + Rru_A0706 0.17 -0.9
834,300 - Rru_A0706 0.17 +0.1
834,300 - Rru_A0706 0.17 -0.2
834,300 - Rru_A0706 0.17 -0.1
834,530 - Rru_A0706 0.41 +0.7
834,551 + Rru_A0706 0.44 +0.3
834,552 - Rru_A0706 0.44 -1.2
834,552 - Rru_A0706 0.44 +0.3
834,722 + Rru_A0706 0.62 -0.2
834,722 + Rru_A0706 0.62 -0.2
834,722 + Rru_A0706 0.62 -0.1
834,722 + Rru_A0706 0.62 +0.4
834,723 - Rru_A0706 0.62 -1.2
834,723 - Rru_A0706 0.62 +0.7
834,723 - Rru_A0706 0.62 +1.0
834,723 - Rru_A0706 0.62 +1.7
834,723 - Rru_A0706 0.62 +0.4
834,726 - Rru_A0706 0.62 +0.1
834,886 - Rru_A0706 0.79 +0.5
834,886 - Rru_A0706 0.79 -0.9
834,886 - Rru_A0706 0.79 +0.5
834,888 + Rru_A0706 0.80 -0.7
834,888 + Rru_A0706 0.80 -0.3
834,888 + Rru_A0706 0.80 -1.6
834,888 + Rru_A0706 0.80 +0.3
834,889 - Rru_A0706 0.80 -0.3
834,889 - Rru_A0706 0.80 -3.5
834,889 - Rru_A0706 0.80 -0.1
834,993 - -0.0

Or see this region's nucleotide sequence