Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0677

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0676 and Rru_A0677 are separated by 120 nucleotidesRru_A0677 and Rru_A0678 overlap by 4 nucleotides Rru_A0676: Rru_A0676 - Transposase IS116/IS110/IS902 (NCBI), at 799,105 to 800,136 _A0676 Rru_A0677: Rru_A0677 - hypothetical protein (NCBI), at 800,257 to 800,802 _A0677 Rru_A0678: Rru_A0678 - Multi antimicrobial extrusion protein MatE (NCBI), at 800,799 to 802,190 _A0678 Position (kb) 800 801Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 800.275 kb on - strandat 800.275 kb on - strandat 800.275 kb on - strandat 800.275 kb on - strandat 800.364 kb on + strand, within Rru_A0677at 800.404 kb on + strand, within Rru_A0677at 800.404 kb on + strand, within Rru_A0677at 800.404 kb on + strand, within Rru_A0677at 800.405 kb on - strand, within Rru_A0677at 800.427 kb on + strand, within Rru_A0677at 800.428 kb on - strand, within Rru_A0677at 800.572 kb on + strand, within Rru_A0677at 800.572 kb on + strand, within Rru_A0677at 800.573 kb on - strand, within Rru_A0677at 800.573 kb on - strand, within Rru_A0677at 800.573 kb on - strand, within Rru_A0677at 800.949 kb on + strand, within Rru_A0678at 800.950 kb on - strand, within Rru_A0678at 801.028 kb on + strand, within Rru_A0678at 801.029 kb on - strand, within Rru_A0678at 801.029 kb on - strand, within Rru_A0678at 801.029 kb on - strand, within Rru_A0678at 801.029 kb on - strand, within Rru_A0678at 801.029 kb on - strand, within Rru_A0678at 801.029 kb on - strand, within Rru_A0678at 801.029 kb on - strand, within Rru_A0678at 801.029 kb on - strand, within Rru_A0678at 801.029 kb on - strand, within Rru_A0678at 801.030 kb on + strand, within Rru_A0678at 801.030 kb on + strand, within Rru_A0678at 801.030 kb on + strand, within Rru_A0678at 801.065 kb on - strand, within Rru_A0678at 801.077 kb on + strand, within Rru_A0678at 801.077 kb on + strand, within Rru_A0678at 801.078 kb on - strand, within Rru_A0678at 801.087 kb on + strand, within Rru_A0678at 801.263 kb on + strand, within Rru_A0678at 801.315 kb on + strand, within Rru_A0678at 801.315 kb on + strand, within Rru_A0678at 801.337 kb on + strand, within Rru_A0678at 801.337 kb on + strand, within Rru_A0678at 801.337 kb on + strand, within Rru_A0678at 801.338 kb on - strand, within Rru_A0678at 801.356 kb on + strand, within Rru_A0678at 801.358 kb on + strand, within Rru_A0678at 801.358 kb on + strand, within Rru_A0678at 801.358 kb on + strand, within Rru_A0678at 801.359 kb on - strand, within Rru_A0678at 801.359 kb on - strand, within Rru_A0678at 801.359 kb on - strand, within Rru_A0678at 801.359 kb on - strand, within Rru_A0678at 801.508 kb on - strand, within Rru_A0678at 801.521 kb on + strand, within Rru_A0678at 801.521 kb on + strand, within Rru_A0678at 801.521 kb on + strand, within Rru_A0678at 801.521 kb on + strand, within Rru_A0678at 801.522 kb on - strand, within Rru_A0678at 801.522 kb on - strand, within Rru_A0678at 801.764 kb on - strand, within Rru_A0678

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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800,275 - +0.3
800,275 - +0.2
800,275 - +0.4
800,275 - +0.9
800,364 + Rru_A0677 0.20 +0.4
800,404 + Rru_A0677 0.27 -2.3
800,404 + Rru_A0677 0.27 +0.8
800,404 + Rru_A0677 0.27 -0.1
800,405 - Rru_A0677 0.27 -0.5
800,427 + Rru_A0677 0.31 +1.6
800,428 - Rru_A0677 0.31 +0.5
800,572 + Rru_A0677 0.58 +0.9
800,572 + Rru_A0677 0.58 +0.6
800,573 - Rru_A0677 0.58 -0.8
800,573 - Rru_A0677 0.58 +1.5
800,573 - Rru_A0677 0.58 -3.8
800,949 + Rru_A0678 0.11 -1.3
800,950 - Rru_A0678 0.11 -0.0
801,028 + Rru_A0678 0.16 -0.2
801,029 - Rru_A0678 0.17 -1.5
801,029 - Rru_A0678 0.17 +0.4
801,029 - Rru_A0678 0.17 +0.3
801,029 - Rru_A0678 0.17 +1.1
801,029 - Rru_A0678 0.17 -0.0
801,029 - Rru_A0678 0.17 -0.4
801,029 - Rru_A0678 0.17 -0.5
801,029 - Rru_A0678 0.17 -0.2
801,029 - Rru_A0678 0.17 +0.5
801,030 + Rru_A0678 0.17 -0.4
801,030 + Rru_A0678 0.17 -0.5
801,030 + Rru_A0678 0.17 -0.0
801,065 - Rru_A0678 0.19 +0.7
801,077 + Rru_A0678 0.20 +0.2
801,077 + Rru_A0678 0.20 -2.7
801,078 - Rru_A0678 0.20 -0.9
801,087 + Rru_A0678 0.21 -1.0
801,263 + Rru_A0678 0.33 -1.0
801,315 + Rru_A0678 0.37 -0.6
801,315 + Rru_A0678 0.37 -0.1
801,337 + Rru_A0678 0.39 -1.0
801,337 + Rru_A0678 0.39 +0.1
801,337 + Rru_A0678 0.39 -1.8
801,338 - Rru_A0678 0.39 -0.1
801,356 + Rru_A0678 0.40 +1.6
801,358 + Rru_A0678 0.40 +0.4
801,358 + Rru_A0678 0.40 -0.9
801,358 + Rru_A0678 0.40 -0.1
801,359 - Rru_A0678 0.40 +0.7
801,359 - Rru_A0678 0.40 +0.2
801,359 - Rru_A0678 0.40 +0.5
801,359 - Rru_A0678 0.40 +0.2
801,508 - Rru_A0678 0.51 -0.6
801,521 + Rru_A0678 0.52 +0.7
801,521 + Rru_A0678 0.52 +0.7
801,521 + Rru_A0678 0.52 -0.9
801,521 + Rru_A0678 0.52 +0.2
801,522 - Rru_A0678 0.52 -1.1
801,522 - Rru_A0678 0.52 +0.0
801,764 - Rru_A0678 0.69 -2.1

Or see this region's nucleotide sequence