Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0611

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0610 and Rru_A0611 are separated by 222 nucleotides Rru_A0610: Rru_A0610 - hypothetical protein (NCBI), at 721,791 to 722,924 _A0610 Rru_A0611: Rru_A0611 - hypothetical protein (NCBI), at 723,147 to 723,665 _A0611 Position (kb) 723 724Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 722.255 kb on + strand, within Rru_A0610at 722.255 kb on + strand, within Rru_A0610at 722.256 kb on - strand, within Rru_A0610at 722.264 kb on + strand, within Rru_A0610at 722.601 kb on + strand, within Rru_A0610at 722.689 kb on - strand, within Rru_A0610at 722.689 kb on - strand, within Rru_A0610at 722.689 kb on - strand, within Rru_A0610at 722.764 kb on - strand, within Rru_A0610at 722.871 kb on + strandat 722.871 kb on + strandat 722.871 kb on + strandat 722.872 kb on - strandat 722.922 kb on + strandat 722.922 kb on + strandat 722.922 kb on + strandat 722.922 kb on + strandat 722.922 kb on + strandat 722.922 kb on + strandat 722.923 kb on - strandat 722.923 kb on - strandat 723.358 kb on - strand, within Rru_A0611at 723.426 kb on + strand, within Rru_A0611at 723.426 kb on + strand, within Rru_A0611at 723.426 kb on + strand, within Rru_A0611at 723.427 kb on - strand, within Rru_A0611at 723.427 kb on - strand, within Rru_A0611at 723.428 kb on + strand, within Rru_A0611at 723.429 kb on - strand, within Rru_A0611at 723.429 kb on - strand, within Rru_A0611at 723.663 kb on + strandat 723.673 kb on - strandat 723.673 kb on - strandat 723.673 kb on - strandat 723.673 kb on - strandat 724.057 kb on - strandat 724.057 kb on - strandat 724.057 kb on - strandat 724.057 kb on - strandat 724.057 kb on - strandat 724.057 kb on - strandat 724.068 kb on - strandat 724.135 kb on - strandat 724.135 kb on - strandat 724.135 kb on - strandat 724.337 kb on + strandat 724.540 kb on + strandat 724.551 kb on + strandat 724.604 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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722,255 + Rru_A0610 0.41 +0.6
722,255 + Rru_A0610 0.41 -1.0
722,256 - Rru_A0610 0.41 -4.3
722,264 + Rru_A0610 0.42 -0.4
722,601 + Rru_A0610 0.71 -1.4
722,689 - Rru_A0610 0.79 +0.0
722,689 - Rru_A0610 0.79 -0.4
722,689 - Rru_A0610 0.79 -0.6
722,764 - Rru_A0610 0.86 +0.3
722,871 + -1.4
722,871 + +0.5
722,871 + +0.4
722,872 - -0.0
722,922 + -0.0
722,922 + -0.6
722,922 + +0.5
722,922 + +0.6
722,922 + -0.9
722,922 + -0.7
722,923 - +2.4
722,923 - -1.6
723,358 - Rru_A0611 0.41 -0.3
723,426 + Rru_A0611 0.54 -0.5
723,426 + Rru_A0611 0.54 -0.3
723,426 + Rru_A0611 0.54 -1.2
723,427 - Rru_A0611 0.54 +3.1
723,427 - Rru_A0611 0.54 -1.3
723,428 + Rru_A0611 0.54 -1.5
723,429 - Rru_A0611 0.54 -2.0
723,429 - Rru_A0611 0.54 +0.8
723,663 + -0.3
723,673 - +0.9
723,673 - -0.2
723,673 - -0.2
723,673 - -1.0
724,057 - -0.5
724,057 - -1.2
724,057 - -2.2
724,057 - -1.1
724,057 - -0.0
724,057 - -1.7
724,068 - -0.2
724,135 - -0.8
724,135 - -0.8
724,135 - -0.7
724,337 + +0.1
724,540 + -1.1
724,551 + -1.4
724,604 + -0.5

Or see this region's nucleotide sequence