Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0515 and Rru_A0516 are separated by 54 nucleotides Rru_A0516 and Rru_A0517 overlap by 4 nucleotides Rru_A0517 and Rru_A0518 are separated by 66 nucleotides
Rru_A0515: Rru_A0515 - HAD-superfamily subfamily IIA hydrolase (NCBI), at 609,465 to 610,352
_A0515
Rru_A0516: Rru_A0516 - GCN5-related N-acetyltransferase (NCBI), at 610,407 to 610,919
_A0516
Rru_A0517: Rru_A0517 - NAD(+) kinase (NCBI), at 610,916 to 611,725
_A0517
Rru_A0518: Rru_A0518 - molybdenum cofactor biosynthesis protein (NCBI), at 611,792 to 612,889
_A0518
Position (kb) 610
611 Strain fitness (log2 ratio) -2
-1
0
1
2 at 609.449 kb on + strand at 609.450 kb on - strand at 609.450 kb on - strand at 609.525 kb on + strand at 609.525 kb on + strand at 609.526 kb on - strand at 609.526 kb on - strand at 609.711 kb on + strand, within Rru_A0515 at 609.711 kb on + strand, within Rru_A0515 at 609.712 kb on - strand, within Rru_A0515 at 609.712 kb on - strand, within Rru_A0515 at 609.712 kb on - strand, within Rru_A0515 at 609.712 kb on - strand, within Rru_A0515 at 609.930 kb on + strand, within Rru_A0515 at 610.105 kb on - strand, within Rru_A0515 at 610.175 kb on + strand, within Rru_A0515 at 610.176 kb on - strand, within Rru_A0515 at 610.181 kb on + strand, within Rru_A0515 at 610.182 kb on - strand, within Rru_A0515 at 610.350 kb on + strand at 610.587 kb on - strand, within Rru_A0516 at 610.792 kb on - strand, within Rru_A0516 at 611.726 kb on + strand at 611.726 kb on + strand at 611.726 kb on + strand at 611.726 kb on + strand at 611.726 kb on + strand at 611.727 kb on - strand at 611.727 kb on - strand at 611.727 kb on - strand at 611.727 kb on - strand at 611.727 kb on - strand at 611.729 kb on - strand at 611.729 kb on - strand at 611.729 kb on - strand at 611.729 kb on - strand at 611.729 kb on - strand at 611.729 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 609,449 + +1.0 609,450 - +0.8 609,450 - +1.1 609,525 + +0.1 609,525 + +1.7 609,526 - -1.4 609,526 - +2.2 609,711 + Rru_A0515 0.28 +0.5 609,711 + Rru_A0515 0.28 +1.2 609,712 - Rru_A0515 0.28 -2.4 609,712 - Rru_A0515 0.28 +0.4 609,712 - Rru_A0515 0.28 -2.2 609,712 - Rru_A0515 0.28 -2.7 609,930 + Rru_A0515 0.52 -0.6 610,105 - Rru_A0515 0.72 +1.1 610,175 + Rru_A0515 0.80 +1.1 610,176 - Rru_A0515 0.80 -0.9 610,181 + Rru_A0515 0.81 +0.6 610,182 - Rru_A0515 0.81 -0.7 610,350 + +0.9 610,587 - Rru_A0516 0.35 +0.5 610,792 - Rru_A0516 0.75 +0.5 611,726 + -2.5 611,726 + -1.0 611,726 + -0.6 611,726 + +1.6 611,726 + -1.4 611,727 - +0.3 611,727 - -0.2 611,727 - +1.3 611,727 - -0.5 611,727 - -0.3 611,729 - -1.7 611,729 - +0.2 611,729 - +0.8 611,729 - +1.9 611,729 - -2.0 611,729 - +0.7
Or see this region's nucleotide sequence