Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0294

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0293 and Rru_A0294 are separated by 374 nucleotidesRru_A0294 and Rru_A0295 are separated by 82 nucleotides Rru_A0293: Rru_A0293 - Ribosomal protein S1 (NCBI), at 358,078 to 359,799 _A0293 Rru_A0294: Rru_A0294 - Cytidylate kinase (NCBI), at 360,174 to 360,815 _A0294 Rru_A0295: Rru_A0295 - 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI), at 360,898 to 362,253 _A0295 Position (kb) 360 361Strain fitness (log2 ratio) -2 -1 0 1at 359.881 kb on - strandat 360.125 kb on - strandat 360.125 kb on - strandat 360.125 kb on - strandat 360.719 kb on + strand, within Rru_A0294at 360.810 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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359,881 - -2.0
360,125 - +0.7
360,125 - -0.5
360,125 - -1.7
360,719 + Rru_A0294 0.85 +0.7
360,810 - -2.4

Or see this region's nucleotide sequence