Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0262

Experiment: Hexanoic 21 mM; anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0261 and Rru_AR0011 are separated by 292 nucleotidesRru_AR0011 and Rru_A0262 are separated by 98 nucleotidesRru_A0262 and Rru_A0263 are separated by 624 nucleotides Rru_A0261: Rru_A0261 - hypothetical protein (NCBI), at 322,896 to 323,807 _A0261 Rru_AR0011: Rru_AR0011 - tRNA-Gln (NCBI), at 324,100 to 324,174 _AR0011 Rru_A0262: Rru_A0262 - chemotaxis sensory transducer (NCBI), at 324,273 to 325,601 _A0262 Rru_A0263: Rru_A0263 - 4-diphosphocytidyl-2C-methyl-D-erythritol kinase (NCBI), at 326,226 to 327,140 _A0263 Position (kb) 324 325 326Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 323.334 kb on + strand, within Rru_A0261at 323.335 kb on - strand, within Rru_A0261at 323.391 kb on + strand, within Rru_A0261at 323.625 kb on + strand, within Rru_A0261at 323.695 kb on + strand, within Rru_A0261at 323.907 kb on - strandat 323.915 kb on + strandat 323.916 kb on - strandat 323.916 kb on - strandat 323.966 kb on + strandat 324.015 kb on + strandat 324.274 kb on + strandat 324.274 kb on + strandat 324.275 kb on - strandat 324.600 kb on - strand, within Rru_A0262at 325.150 kb on + strand, within Rru_A0262at 325.150 kb on + strand, within Rru_A0262at 325.150 kb on + strand, within Rru_A0262at 325.150 kb on + strand, within Rru_A0262at 325.151 kb on - strand, within Rru_A0262at 325.180 kb on + strand, within Rru_A0262at 325.180 kb on + strand, within Rru_A0262at 325.180 kb on + strand, within Rru_A0262at 325.181 kb on - strand, within Rru_A0262at 325.181 kb on - strand, within Rru_A0262at 325.181 kb on - strand, within Rru_A0262at 325.282 kb on + strand, within Rru_A0262at 325.283 kb on - strand, within Rru_A0262at 325.294 kb on + strand, within Rru_A0262at 325.295 kb on - strand, within Rru_A0262at 325.295 kb on - strand, within Rru_A0262at 325.295 kb on - strand, within Rru_A0262at 325.484 kb on - strandat 325.539 kb on + strandat 325.540 kb on - strandat 325.597 kb on + strandat 325.597 kb on + strandat 325.597 kb on + strandat 325.597 kb on + strandat 325.597 kb on + strandat 325.597 kb on + strandat 325.597 kb on + strandat 325.598 kb on - strandat 325.598 kb on - strandat 325.598 kb on - strandat 325.598 kb on - strandat 325.640 kb on + strandat 325.640 kb on + strandat 325.641 kb on - strandat 325.918 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
remove
323,334 + Rru_A0261 0.48 +0.1
323,335 - Rru_A0261 0.48 -0.3
323,391 + Rru_A0261 0.54 -0.2
323,625 + Rru_A0261 0.80 -0.7
323,695 + Rru_A0261 0.88 +0.8
323,907 - +0.4
323,915 + -3.0
323,916 - +0.1
323,916 - -1.2
323,966 + +1.0
324,015 + +0.5
324,274 + -0.3
324,274 + -0.6
324,275 - -0.0
324,600 - Rru_A0262 0.25 -1.2
325,150 + Rru_A0262 0.66 +0.5
325,150 + Rru_A0262 0.66 -1.2
325,150 + Rru_A0262 0.66 +0.3
325,150 + Rru_A0262 0.66 -0.1
325,151 - Rru_A0262 0.66 -0.1
325,180 + Rru_A0262 0.68 -0.5
325,180 + Rru_A0262 0.68 -0.0
325,180 + Rru_A0262 0.68 -0.4
325,181 - Rru_A0262 0.68 -0.6
325,181 - Rru_A0262 0.68 +0.1
325,181 - Rru_A0262 0.68 +0.7
325,282 + Rru_A0262 0.76 -1.5
325,283 - Rru_A0262 0.76 -1.3
325,294 + Rru_A0262 0.77 +0.3
325,295 - Rru_A0262 0.77 -1.4
325,295 - Rru_A0262 0.77 -0.3
325,295 - Rru_A0262 0.77 +0.7
325,484 - -0.2
325,539 + +0.4
325,540 - -3.5
325,597 + -1.0
325,597 + -1.2
325,597 + +0.3
325,597 + +0.3
325,597 + -1.1
325,597 + +0.6
325,597 + -0.7
325,598 - +0.9
325,598 - -0.1
325,598 - +0.2
325,598 - +2.7
325,640 + +0.6
325,640 + +0.8
325,641 - -0.3
325,918 + +0.4

Or see this region's nucleotide sequence