Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0136 and Rru_A0137 are separated by 188 nucleotides Rru_A0137 and Rru_A0138 are separated by 25 nucleotides
Rru_A0136: Rru_A0136 - Protein of unknown function DUF6, transmembrane (NCBI), at 159,420 to 160,346
_A0136
Rru_A0137: Rru_A0137 - TRAP transporter solute receptor, TAXI family (NCBI), at 160,535 to 161,587
_A0137
Rru_A0138: Rru_A0138 - Leucyl aminopeptidase (NCBI), at 161,613 to 163,004
_A0138
Position (kb) 160
161
162 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 159.678 kb on + strand, within Rru_A0136 at 159.963 kb on + strand, within Rru_A0136 at 159.963 kb on + strand, within Rru_A0136 at 160.055 kb on + strand, within Rru_A0136 at 160.055 kb on + strand, within Rru_A0136 at 160.055 kb on + strand, within Rru_A0136 at 160.055 kb on + strand, within Rru_A0136 at 160.056 kb on - strand, within Rru_A0136 at 160.056 kb on - strand, within Rru_A0136 at 160.056 kb on - strand, within Rru_A0136 at 160.200 kb on + strand, within Rru_A0136 at 160.200 kb on + strand, within Rru_A0136 at 160.200 kb on + strand, within Rru_A0136 at 160.201 kb on - strand, within Rru_A0136 at 160.405 kb on + strand at 160.405 kb on + strand at 160.406 kb on - strand at 160.406 kb on - strand at 160.412 kb on + strand at 160.413 kb on - strand at 160.685 kb on + strand, within Rru_A0137 at 160.686 kb on - strand, within Rru_A0137 at 160.686 kb on - strand, within Rru_A0137 at 160.816 kb on + strand, within Rru_A0137 at 160.816 kb on + strand, within Rru_A0137 at 160.887 kb on - strand, within Rru_A0137 at 160.887 kb on - strand, within Rru_A0137 at 160.887 kb on - strand, within Rru_A0137 at 160.888 kb on + strand, within Rru_A0137 at 160.888 kb on + strand, within Rru_A0137 at 160.949 kb on + strand, within Rru_A0137 at 160.949 kb on + strand, within Rru_A0137 at 160.949 kb on + strand, within Rru_A0137 at 160.949 kb on + strand, within Rru_A0137 at 160.950 kb on - strand, within Rru_A0137 at 160.950 kb on - strand, within Rru_A0137 at 160.950 kb on - strand, within Rru_A0137 at 160.950 kb on - strand, within Rru_A0137 at 160.951 kb on + strand, within Rru_A0137 at 160.952 kb on - strand, within Rru_A0137 at 160.952 kb on - strand, within Rru_A0137 at 160.952 kb on - strand, within Rru_A0137 at 161.321 kb on + strand, within Rru_A0137 at 161.321 kb on + strand, within Rru_A0137 at 161.322 kb on - strand, within Rru_A0137 at 161.322 kb on - strand, within Rru_A0137 at 161.537 kb on + strand at 161.538 kb on - strand at 161.538 kb on - strand at 161.538 kb on - strand at 161.538 kb on - strand at 161.838 kb on + strand, within Rru_A0138 at 161.839 kb on - strand, within Rru_A0138 at 161.880 kb on + strand, within Rru_A0138 at 161.952 kb on + strand, within Rru_A0138 at 161.953 kb on - strand, within Rru_A0138 at 162.083 kb on + strand, within Rru_A0138 at 162.084 kb on - strand, within Rru_A0138 at 162.198 kb on + strand, within Rru_A0138 at 162.198 kb on + strand, within Rru_A0138 at 162.198 kb on + strand, within Rru_A0138 at 162.198 kb on + strand, within Rru_A0138 at 162.199 kb on - strand, within Rru_A0138 at 162.199 kb on - strand, within Rru_A0138 at 162.199 kb on - strand, within Rru_A0138 at 162.199 kb on - strand, within Rru_A0138 at 162.371 kb on + strand, within Rru_A0138 at 162.372 kb on - strand, within Rru_A0138 at 162.372 kb on - strand, within Rru_A0138 at 162.542 kb on + strand, within Rru_A0138 at 162.543 kb on - strand, within Rru_A0138
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 159,678 + Rru_A0136 0.28 -0.7 159,963 + Rru_A0136 0.59 +0.1 159,963 + Rru_A0136 0.59 +0.3 160,055 + Rru_A0136 0.69 -0.1 160,055 + Rru_A0136 0.69 -0.7 160,055 + Rru_A0136 0.69 +0.4 160,055 + Rru_A0136 0.69 -0.2 160,056 - Rru_A0136 0.69 +0.7 160,056 - Rru_A0136 0.69 +0.4 160,056 - Rru_A0136 0.69 +0.9 160,200 + Rru_A0136 0.84 -0.0 160,200 + Rru_A0136 0.84 -2.0 160,200 + Rru_A0136 0.84 -2.1 160,201 - Rru_A0136 0.84 -0.3 160,405 + +1.5 160,405 + +2.6 160,406 - +0.6 160,406 - +0.7 160,412 + -0.2 160,413 - +1.5 160,685 + Rru_A0137 0.14 -1.2 160,686 - Rru_A0137 0.14 -0.4 160,686 - Rru_A0137 0.14 -3.1 160,816 + Rru_A0137 0.27 -0.7 160,816 + Rru_A0137 0.27 -2.0 160,887 - Rru_A0137 0.33 -2.5 160,887 - Rru_A0137 0.33 -0.2 160,887 - Rru_A0137 0.33 -0.4 160,888 + Rru_A0137 0.34 -1.9 160,888 + Rru_A0137 0.34 -2.6 160,949 + Rru_A0137 0.39 -0.2 160,949 + Rru_A0137 0.39 +0.2 160,949 + Rru_A0137 0.39 +1.1 160,949 + Rru_A0137 0.39 -0.3 160,950 - Rru_A0137 0.39 -2.3 160,950 - Rru_A0137 0.39 +0.1 160,950 - Rru_A0137 0.39 -0.7 160,950 - Rru_A0137 0.39 -0.8 160,951 + Rru_A0137 0.40 +0.2 160,952 - Rru_A0137 0.40 -2.7 160,952 - Rru_A0137 0.40 -2.9 160,952 - Rru_A0137 0.40 -3.3 161,321 + Rru_A0137 0.75 -2.1 161,321 + Rru_A0137 0.75 -1.3 161,322 - Rru_A0137 0.75 -0.5 161,322 - Rru_A0137 0.75 -2.3 161,537 + -1.7 161,538 - -0.9 161,538 - +0.4 161,538 - -0.1 161,538 - -0.0 161,838 + Rru_A0138 0.16 -1.7 161,839 - Rru_A0138 0.16 -0.4 161,880 + Rru_A0138 0.19 -0.3 161,952 + Rru_A0138 0.24 -2.0 161,953 - Rru_A0138 0.24 +0.2 162,083 + Rru_A0138 0.34 -1.4 162,084 - Rru_A0138 0.34 +1.1 162,198 + Rru_A0138 0.42 -0.4 162,198 + Rru_A0138 0.42 -3.0 162,198 + Rru_A0138 0.42 -0.1 162,198 + Rru_A0138 0.42 -0.9 162,199 - Rru_A0138 0.42 +0.4 162,199 - Rru_A0138 0.42 +0.0 162,199 - Rru_A0138 0.42 -0.7 162,199 - Rru_A0138 0.42 -1.2 162,371 + Rru_A0138 0.54 +0.8 162,372 - Rru_A0138 0.55 -0.5 162,372 - Rru_A0138 0.55 -0.4 162,542 + Rru_A0138 0.67 -0.3 162,543 - Rru_A0138 0.67 +0.6
Or see this region's nucleotide sequence