Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0097

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0096 and Rru_A0097 are separated by 156 nucleotidesRru_A0097 and Rru_A0098 are separated by 56 nucleotides Rru_A0096: Rru_A0096 - Secretion protein HlyD (NCBI), at 110,136 to 111,101 _A0096 Rru_A0097: Rru_A0097 - Class I peptide chain release factor (NCBI), at 111,258 to 111,680 _A0097 Rru_A0098: Rru_A0098 - Cystathionine gamma-synthase (NCBI), at 111,737 to 112,948 _A0098 Position (kb) 111 112Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 110.425 kb on - strand, within Rru_A0096at 110.580 kb on + strand, within Rru_A0096at 110.580 kb on + strand, within Rru_A0096at 110.580 kb on + strand, within Rru_A0096at 110.581 kb on - strand, within Rru_A0096at 111.186 kb on + strandat 111.187 kb on - strandat 111.187 kb on - strandat 111.187 kb on - strandat 111.260 kb on - strandat 111.534 kb on + strand, within Rru_A0097at 111.582 kb on + strand, within Rru_A0097at 111.583 kb on - strand, within Rru_A0097at 111.691 kb on + strandat 111.692 kb on - strandat 111.692 kb on - strandat 111.692 kb on - strandat 111.738 kb on + strandat 111.738 kb on + strandat 111.835 kb on - strandat 111.897 kb on + strand, within Rru_A0098at 111.898 kb on - strand, within Rru_A0098at 111.898 kb on - strand, within Rru_A0098at 111.898 kb on - strand, within Rru_A0098at 111.898 kb on - strand, within Rru_A0098at 111.898 kb on - strand, within Rru_A0098at 111.898 kb on - strand, within Rru_A0098at 111.936 kb on + strand, within Rru_A0098at 111.936 kb on + strand, within Rru_A0098at 111.937 kb on - strand, within Rru_A0098at 112.110 kb on + strand, within Rru_A0098at 112.110 kb on + strand, within Rru_A0098at 112.110 kb on + strand, within Rru_A0098at 112.111 kb on - strand, within Rru_A0098at 112.309 kb on - strand, within Rru_A0098at 112.309 kb on - strand, within Rru_A0098at 112.573 kb on + strand, within Rru_A0098at 112.603 kb on - strand, within Rru_A0098

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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110,425 - Rru_A0096 0.30 +0.7
110,580 + Rru_A0096 0.46 -3.5
110,580 + Rru_A0096 0.46 +1.2
110,580 + Rru_A0096 0.46 -0.1
110,581 - Rru_A0096 0.46 +0.9
111,186 + -0.6
111,187 - +1.3
111,187 - +0.7
111,187 - +0.1
111,260 - +0.4
111,534 + Rru_A0097 0.65 +0.5
111,582 + Rru_A0097 0.77 +1.4
111,583 - Rru_A0097 0.77 -0.3
111,691 + +2.5
111,692 - -1.1
111,692 - -0.5
111,692 - -0.0
111,738 + +0.1
111,738 + +0.1
111,835 - +0.5
111,897 + Rru_A0098 0.13 -0.2
111,898 - Rru_A0098 0.13 -1.0
111,898 - Rru_A0098 0.13 -1.2
111,898 - Rru_A0098 0.13 +1.0
111,898 - Rru_A0098 0.13 +0.1
111,898 - Rru_A0098 0.13 +0.1
111,898 - Rru_A0098 0.13 -0.5
111,936 + Rru_A0098 0.16 -0.5
111,936 + Rru_A0098 0.16 +0.7
111,937 - Rru_A0098 0.17 +0.7
112,110 + Rru_A0098 0.31 -0.2
112,110 + Rru_A0098 0.31 +0.8
112,110 + Rru_A0098 0.31 -1.4
112,111 - Rru_A0098 0.31 -0.2
112,309 - Rru_A0098 0.47 -0.3
112,309 - Rru_A0098 0.47 +1.1
112,573 + Rru_A0098 0.69 -1.9
112,603 - Rru_A0098 0.71 +0.1

Or see this region's nucleotide sequence