Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0025

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0024 and Rru_A0025 are separated by 122 nucleotidesRru_A0025 and Rru_A0026 are separated by 14 nucleotides Rru_A0024: Rru_A0024 - peptidase (NCBI), at 28,454 to 29,599 _A0024 Rru_A0025: Rru_A0025 - hypothetical protein (NCBI), at 29,722 to 30,261 _A0025 Rru_A0026: Rru_A0026 - hypothetical protein (NCBI), at 30,276 to 31,619 _A0026 Position (kb) 29 30 31Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 28.867 kb on + strand, within Rru_A0024at 28.867 kb on + strand, within Rru_A0024at 28.867 kb on + strand, within Rru_A0024at 29.111 kb on + strand, within Rru_A0024at 29.111 kb on + strand, within Rru_A0024at 29.264 kb on - strand, within Rru_A0024at 29.264 kb on - strand, within Rru_A0024at 29.264 kb on - strand, within Rru_A0024at 29.393 kb on - strand, within Rru_A0024at 29.635 kb on + strandat 29.635 kb on + strandat 29.635 kb on + strandat 29.636 kb on - strandat 29.636 kb on - strandat 29.636 kb on - strandat 29.636 kb on - strandat 29.636 kb on - strandat 29.640 kb on + strandat 29.641 kb on - strandat 29.779 kb on - strand, within Rru_A0025at 30.110 kb on - strand, within Rru_A0025at 30.110 kb on - strand, within Rru_A0025at 30.110 kb on - strand, within Rru_A0025at 30.110 kb on - strand, within Rru_A0025at 30.110 kb on - strand, within Rru_A0025at 30.110 kb on - strand, within Rru_A0025at 30.271 kb on + strandat 30.271 kb on + strandat 30.271 kb on + strandat 30.271 kb on + strandat 30.271 kb on + strandat 30.272 kb on - strandat 30.378 kb on + strandat 30.378 kb on + strandat 30.379 kb on - strandat 30.379 kb on - strandat 30.379 kb on - strandat 30.379 kb on - strandat 30.379 kb on - strandat 30.379 kb on - strandat 30.640 kb on - strand, within Rru_A0026at 30.640 kb on - strand, within Rru_A0026at 30.640 kb on - strand, within Rru_A0026at 30.834 kb on + strand, within Rru_A0026at 30.834 kb on + strand, within Rru_A0026at 30.835 kb on - strand, within Rru_A0026at 30.891 kb on + strand, within Rru_A0026at 30.891 kb on + strand, within Rru_A0026at 30.891 kb on + strand, within Rru_A0026at 30.892 kb on - strand, within Rru_A0026at 31.027 kb on - strand, within Rru_A0026at 31.027 kb on - strand, within Rru_A0026at 31.027 kb on - strand, within Rru_A0026at 31.027 kb on - strand, within Rru_A0026at 31.027 kb on - strand, within Rru_A0026at 31.027 kb on - strand, within Rru_A0026

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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28,867 + Rru_A0024 0.36 -0.7
28,867 + Rru_A0024 0.36 +0.3
28,867 + Rru_A0024 0.36 +0.1
29,111 + Rru_A0024 0.57 +0.6
29,111 + Rru_A0024 0.57 +0.7
29,264 - Rru_A0024 0.71 +0.2
29,264 - Rru_A0024 0.71 -3.0
29,264 - Rru_A0024 0.71 -0.1
29,393 - Rru_A0024 0.82 -1.8
29,635 + -0.3
29,635 + -0.4
29,635 + +0.2
29,636 - +0.5
29,636 - -0.0
29,636 - +0.1
29,636 - +2.7
29,636 - -1.3
29,640 + +1.5
29,641 - -0.5
29,779 - Rru_A0025 0.11 -0.8
30,110 - Rru_A0025 0.72 -0.2
30,110 - Rru_A0025 0.72 +0.0
30,110 - Rru_A0025 0.72 +0.1
30,110 - Rru_A0025 0.72 -0.2
30,110 - Rru_A0025 0.72 -0.9
30,110 - Rru_A0025 0.72 -2.3
30,271 + +0.0
30,271 + -0.5
30,271 + +0.4
30,271 + -0.3
30,271 + +1.2
30,272 - -1.9
30,378 + -4.0
30,378 + +0.5
30,379 - +0.0
30,379 - +1.5
30,379 - -3.5
30,379 - -0.4
30,379 - -0.1
30,379 - -1.1
30,640 - Rru_A0026 0.27 +0.5
30,640 - Rru_A0026 0.27 -0.4
30,640 - Rru_A0026 0.27 +1.9
30,834 + Rru_A0026 0.42 -3.4
30,834 + Rru_A0026 0.42 +1.2
30,835 - Rru_A0026 0.42 +1.4
30,891 + Rru_A0026 0.46 -5.1
30,891 + Rru_A0026 0.46 -0.5
30,891 + Rru_A0026 0.46 +1.2
30,892 - Rru_A0026 0.46 +0.1
31,027 - Rru_A0026 0.56 +0.8
31,027 - Rru_A0026 0.56 -3.4
31,027 - Rru_A0026 0.56 -0.9
31,027 - Rru_A0026 0.56 -1.3
31,027 - Rru_A0026 0.56 +0.2
31,027 - Rru_A0026 0.56 -0.1

Or see this region's nucleotide sequence