Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04319 and SMc04320 are separated by 42 nucleotides SMc04320 and SMc04321 are separated by 313 nucleotides SMc04321 and SMc04322 are separated by 36 nucleotides
SMc04319: SMc04319 - hypothetical protein, at 2,222,299 to 2,222,586
SMc04319
SMc04320: SMc04320 - 30S ribosomal protein S21, at 2,222,629 to 2,222,865
SMc04320
SMc04321: SMc04321 - glutathione S-transferase, at 2,223,179 to 2,223,853
SMc04321
SMc04322: SMc04322 - oxidoreductase, at 2,223,890 to 2,224,939
SMc04322
Position (kb)
2223
2224 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2222.315 kb on - strand at 2222.428 kb on + strand, within SMc04319 at 2222.545 kb on - strand, within SMc04319 at 2222.584 kb on + strand at 2222.585 kb on - strand at 2222.585 kb on - strand at 2222.625 kb on + strand at 2222.636 kb on + strand at 2222.636 kb on + strand at 2222.928 kb on - strand at 2223.118 kb on + strand at 2223.118 kb on + strand at 2223.119 kb on - strand at 2223.119 kb on - strand at 2223.119 kb on - strand at 2223.145 kb on + strand at 2223.145 kb on + strand at 2223.145 kb on + strand at 2223.194 kb on + strand at 2223.194 kb on + strand at 2223.242 kb on + strand at 2223.308 kb on + strand, within SMc04321 at 2223.399 kb on - strand, within SMc04321 at 2223.494 kb on + strand, within SMc04321 at 2223.495 kb on - strand, within SMc04321 at 2223.495 kb on - strand, within SMc04321 at 2223.600 kb on - strand, within SMc04321 at 2223.693 kb on - strand, within SMc04321 at 2223.804 kb on - strand at 2223.821 kb on + strand at 2223.822 kb on - strand at 2223.822 kb on - strand at 2223.823 kb on + strand at 2223.824 kb on - strand at 2223.851 kb on + strand at 2224.017 kb on - strand, within SMc04322 at 2224.017 kb on - strand, within SMc04322 at 2224.071 kb on - strand, within SMc04322 at 2224.071 kb on - strand, within SMc04322 at 2224.071 kb on - strand, within SMc04322 at 2224.071 kb on - strand, within SMc04322 at 2224.071 kb on - strand, within SMc04322 at 2224.321 kb on + strand, within SMc04322 at 2224.322 kb on - strand, within SMc04322 at 2224.351 kb on + strand, within SMc04322 at 2224.367 kb on + strand, within SMc04322 at 2224.367 kb on + strand, within SMc04322 at 2224.448 kb on + strand, within SMc04322 at 2224.449 kb on - strand, within SMc04322 at 2224.449 kb on - strand, within SMc04322 at 2224.449 kb on - strand, within SMc04322 at 2224.449 kb on - strand, within SMc04322
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 2,222,315 - +0.2 2,222,428 + SMc04319 0.45 -0.1 2,222,545 - SMc04319 0.85 +0.1 2,222,584 + -1.7 2,222,585 - +0.1 2,222,585 - -1.1 2,222,625 + +0.2 2,222,636 + +1.0 2,222,636 + +0.4 2,222,928 - -0.5 2,223,118 + -0.1 2,223,118 + +4.1 2,223,119 - +0.6 2,223,119 - -0.3 2,223,119 - -0.4 2,223,145 + -1.1 2,223,145 + +0.1 2,223,145 + +0.2 2,223,194 + -0.3 2,223,194 + -0.8 2,223,242 + -0.0 2,223,308 + SMc04321 0.19 -0.4 2,223,399 - SMc04321 0.33 +0.7 2,223,494 + SMc04321 0.47 -0.5 2,223,495 - SMc04321 0.47 -1.8 2,223,495 - SMc04321 0.47 -1.9 2,223,600 - SMc04321 0.62 +0.2 2,223,693 - SMc04321 0.76 +1.1 2,223,804 - +0.3 2,223,821 + +3.1 2,223,822 - -0.9 2,223,822 - +2.8 2,223,823 + -1.3 2,223,824 - -0.7 2,223,851 + +0.2 2,224,017 - SMc04322 0.12 +0.0 2,224,017 - SMc04322 0.12 -0.3 2,224,071 - SMc04322 0.17 +1.6 2,224,071 - SMc04322 0.17 +0.0 2,224,071 - SMc04322 0.17 +0.3 2,224,071 - SMc04322 0.17 -0.9 2,224,071 - SMc04322 0.17 +0.2 2,224,321 + SMc04322 0.41 +0.2 2,224,322 - SMc04322 0.41 +1.5 2,224,351 + SMc04322 0.44 -0.8 2,224,367 + SMc04322 0.45 -0.9 2,224,367 + SMc04322 0.45 -1.3 2,224,448 + SMc04322 0.53 +0.4 2,224,449 - SMc04322 0.53 +0.7 2,224,449 - SMc04322 0.53 +0.4 2,224,449 - SMc04322 0.53 -0.4 2,224,449 - SMc04322 0.53 +0.9
Or see this region's nucleotide sequence