Strain Fitness in Sinorhizobium meliloti 1021 around SMc04321

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04319 and SMc04320 are separated by 42 nucleotidesSMc04320 and SMc04321 are separated by 313 nucleotidesSMc04321 and SMc04322 are separated by 36 nucleotides SMc04319: SMc04319 - hypothetical protein, at 2,222,299 to 2,222,586 SMc04319 SMc04320: SMc04320 - 30S ribosomal protein S21, at 2,222,629 to 2,222,865 SMc04320 SMc04321: SMc04321 - glutathione S-transferase, at 2,223,179 to 2,223,853 SMc04321 SMc04322: SMc04322 - oxidoreductase, at 2,223,890 to 2,224,939 SMc04322 Position (kb) 2223 2224Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2222.315 kb on - strandat 2222.428 kb on + strand, within SMc04319at 2222.545 kb on - strand, within SMc04319at 2222.584 kb on + strandat 2222.585 kb on - strandat 2222.585 kb on - strandat 2222.625 kb on + strandat 2222.636 kb on + strandat 2222.636 kb on + strandat 2222.928 kb on - strandat 2223.118 kb on + strandat 2223.118 kb on + strandat 2223.119 kb on - strandat 2223.119 kb on - strandat 2223.119 kb on - strandat 2223.145 kb on + strandat 2223.145 kb on + strandat 2223.145 kb on + strandat 2223.194 kb on + strandat 2223.194 kb on + strandat 2223.242 kb on + strandat 2223.308 kb on + strand, within SMc04321at 2223.399 kb on - strand, within SMc04321at 2223.494 kb on + strand, within SMc04321at 2223.495 kb on - strand, within SMc04321at 2223.495 kb on - strand, within SMc04321at 2223.600 kb on - strand, within SMc04321at 2223.693 kb on - strand, within SMc04321at 2223.804 kb on - strandat 2223.821 kb on + strandat 2223.822 kb on - strandat 2223.822 kb on - strandat 2223.823 kb on + strandat 2223.824 kb on - strandat 2223.851 kb on + strandat 2224.017 kb on - strand, within SMc04322at 2224.017 kb on - strand, within SMc04322at 2224.071 kb on - strand, within SMc04322at 2224.071 kb on - strand, within SMc04322at 2224.071 kb on - strand, within SMc04322at 2224.071 kb on - strand, within SMc04322at 2224.071 kb on - strand, within SMc04322at 2224.321 kb on + strand, within SMc04322at 2224.322 kb on - strand, within SMc04322at 2224.351 kb on + strand, within SMc04322at 2224.367 kb on + strand, within SMc04322at 2224.367 kb on + strand, within SMc04322at 2224.448 kb on + strand, within SMc04322at 2224.449 kb on - strand, within SMc04322at 2224.449 kb on - strand, within SMc04322at 2224.449 kb on - strand, within SMc04322at 2224.449 kb on - strand, within SMc04322

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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2,222,315 - +0.2
2,222,428 + SMc04319 0.45 -0.1
2,222,545 - SMc04319 0.85 +0.1
2,222,584 + -1.7
2,222,585 - +0.1
2,222,585 - -1.1
2,222,625 + +0.2
2,222,636 + +1.0
2,222,636 + +0.4
2,222,928 - -0.5
2,223,118 + -0.1
2,223,118 + +4.1
2,223,119 - +0.6
2,223,119 - -0.3
2,223,119 - -0.4
2,223,145 + -1.1
2,223,145 + +0.1
2,223,145 + +0.2
2,223,194 + -0.3
2,223,194 + -0.8
2,223,242 + -0.0
2,223,308 + SMc04321 0.19 -0.4
2,223,399 - SMc04321 0.33 +0.7
2,223,494 + SMc04321 0.47 -0.5
2,223,495 - SMc04321 0.47 -1.8
2,223,495 - SMc04321 0.47 -1.9
2,223,600 - SMc04321 0.62 +0.2
2,223,693 - SMc04321 0.76 +1.1
2,223,804 - +0.3
2,223,821 + +3.1
2,223,822 - -0.9
2,223,822 - +2.8
2,223,823 + -1.3
2,223,824 - -0.7
2,223,851 + +0.2
2,224,017 - SMc04322 0.12 +0.0
2,224,017 - SMc04322 0.12 -0.3
2,224,071 - SMc04322 0.17 +1.6
2,224,071 - SMc04322 0.17 +0.0
2,224,071 - SMc04322 0.17 +0.3
2,224,071 - SMc04322 0.17 -0.9
2,224,071 - SMc04322 0.17 +0.2
2,224,321 + SMc04322 0.41 +0.2
2,224,322 - SMc04322 0.41 +1.5
2,224,351 + SMc04322 0.44 -0.8
2,224,367 + SMc04322 0.45 -0.9
2,224,367 + SMc04322 0.45 -1.3
2,224,448 + SMc04322 0.53 +0.4
2,224,449 - SMc04322 0.53 +0.7
2,224,449 - SMc04322 0.53 +0.4
2,224,449 - SMc04322 0.53 -0.4
2,224,449 - SMc04322 0.53 +0.9

Or see this region's nucleotide sequence