Strain Fitness in Sinorhizobium meliloti 1021 around SMc03933

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03931 and SMc03932 overlap by 4 nucleotidesSMc03932 and SMc03933 are separated by 114 nucleotidesSMc03933 and SMc03934 are separated by 263 nucleotidesSMc03934 and SMc03935 are separated by 187 nucleotides SMc03931: SMc03931 - sarcosine oxidase subunit alpha, at 3,080,240 to 3,083,233 SMc03931 SMc03932: SMc03932 - sarcosine oxidase subunit delta, at 3,083,230 to 3,083,571 SMc03932 SMc03933: SMc03933 - sarcosine oxidase subunit B protein, at 3,083,686 to 3,084,939 SMc03933 SMc03934: SMc03934 - 30S ribosomal protein S21, at 3,085,203 to 3,085,457 SMc03934 SMc03935: SMc03935 - hypothetical protein, at 3,085,645 to 3,086,532 SMc03935 Position (kb) 3083 3084 3085Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3082.732 kb on - strand, within SMc03931at 3082.744 kb on - strand, within SMc03931at 3082.809 kb on + strand, within SMc03931at 3082.809 kb on + strand, within SMc03931at 3082.810 kb on - strand, within SMc03931at 3082.810 kb on - strand, within SMc03931at 3082.810 kb on - strand, within SMc03931at 3082.810 kb on - strand, within SMc03931at 3082.851 kb on + strand, within SMc03931at 3082.851 kb on + strand, within SMc03931at 3082.851 kb on + strand, within SMc03931at 3082.854 kb on + strand, within SMc03931at 3082.855 kb on - strand, within SMc03931at 3082.855 kb on - strand, within SMc03931at 3083.074 kb on - strandat 3083.259 kb on - strandat 3083.324 kb on + strand, within SMc03932at 3083.325 kb on - strand, within SMc03932at 3083.325 kb on - strand, within SMc03932at 3083.445 kb on - strand, within SMc03932at 3083.496 kb on + strand, within SMc03932at 3083.496 kb on + strand, within SMc03932at 3083.550 kb on - strandat 3083.627 kb on + strandat 3083.627 kb on + strandat 3083.627 kb on + strandat 3083.628 kb on - strandat 3083.628 kb on - strandat 3083.649 kb on - strandat 3083.687 kb on + strandat 3083.687 kb on + strandat 3083.687 kb on + strandat 3083.688 kb on - strandat 3083.991 kb on + strand, within SMc03933at 3083.991 kb on + strand, within SMc03933at 3083.992 kb on - strand, within SMc03933at 3083.992 kb on - strand, within SMc03933at 3084.027 kb on - strand, within SMc03933at 3084.035 kb on + strand, within SMc03933at 3084.036 kb on - strand, within SMc03933at 3084.087 kb on + strand, within SMc03933at 3084.087 kb on + strand, within SMc03933at 3084.087 kb on + strand, within SMc03933at 3084.087 kb on + strand, within SMc03933at 3084.089 kb on + strand, within SMc03933at 3084.089 kb on + strand, within SMc03933at 3084.089 kb on + strand, within SMc03933at 3084.090 kb on - strand, within SMc03933at 3084.090 kb on - strand, within SMc03933at 3084.090 kb on - strand, within SMc03933at 3084.090 kb on - strand, within SMc03933at 3084.090 kb on - strand, within SMc03933at 3084.090 kb on - strand, within SMc03933at 3084.270 kb on + strand, within SMc03933at 3084.368 kb on + strand, within SMc03933at 3084.454 kb on + strand, within SMc03933at 3084.454 kb on + strand, within SMc03933at 3084.455 kb on - strand, within SMc03933at 3084.602 kb on + strand, within SMc03933at 3084.602 kb on + strand, within SMc03933at 3084.603 kb on - strand, within SMc03933at 3084.614 kb on + strand, within SMc03933at 3084.614 kb on + strand, within SMc03933at 3084.615 kb on - strand, within SMc03933at 3084.615 kb on - strand, within SMc03933at 3084.615 kb on - strand, within SMc03933at 3084.615 kb on - strand, within SMc03933at 3084.662 kb on + strand, within SMc03933at 3084.662 kb on + strand, within SMc03933at 3084.663 kb on - strand, within SMc03933at 3084.683 kb on + strand, within SMc03933at 3084.684 kb on - strand, within SMc03933at 3084.689 kb on + strand, within SMc03933at 3084.689 kb on + strand, within SMc03933at 3084.689 kb on + strand, within SMc03933at 3084.689 kb on + strand, within SMc03933at 3084.690 kb on - strand, within SMc03933at 3084.690 kb on - strand, within SMc03933at 3084.690 kb on - strand, within SMc03933at 3084.690 kb on - strand, within SMc03933at 3084.792 kb on - strand, within SMc03933at 3084.792 kb on - strand, within SMc03933at 3084.794 kb on + strand, within SMc03933at 3084.794 kb on + strand, within SMc03933at 3084.794 kb on + strand, within SMc03933at 3084.795 kb on - strand, within SMc03933at 3084.795 kb on - strand, within SMc03933at 3084.826 kb on + strandat 3084.826 kb on + strandat 3084.827 kb on - strandat 3084.842 kb on + strandat 3084.843 kb on - strandat 3084.843 kb on - strandat 3084.929 kb on + strandat 3084.930 kb on - strandat 3084.930 kb on - strandat 3084.930 kb on - strandat 3084.948 kb on + strandat 3084.948 kb on + strandat 3084.948 kb on + strandat 3084.948 kb on + strandat 3084.949 kb on - strandat 3084.949 kb on - strandat 3084.960 kb on + strandat 3085.550 kb on - strandat 3085.885 kb on + strand, within SMc03935

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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3,082,732 - SMc03931 0.83 -0.8
3,082,744 - SMc03931 0.84 +0.5
3,082,809 + SMc03931 0.86 -3.7
3,082,809 + SMc03931 0.86 +0.3
3,082,810 - SMc03931 0.86 +0.0
3,082,810 - SMc03931 0.86 +0.5
3,082,810 - SMc03931 0.86 +0.0
3,082,810 - SMc03931 0.86 +1.2
3,082,851 + SMc03931 0.87 +0.1
3,082,851 + SMc03931 0.87 -0.9
3,082,851 + SMc03931 0.87 +0.7
3,082,854 + SMc03931 0.87 -2.2
3,082,855 - SMc03931 0.87 +0.4
3,082,855 - SMc03931 0.87 -0.4
3,083,074 - +4.5
3,083,259 - +0.8
3,083,324 + SMc03932 0.27 +0.7
3,083,325 - SMc03932 0.28 +0.6
3,083,325 - SMc03932 0.28 +1.5
3,083,445 - SMc03932 0.63 -0.1
3,083,496 + SMc03932 0.78 +0.2
3,083,496 + SMc03932 0.78 +1.2
3,083,550 - -0.1
3,083,627 + -0.0
3,083,627 + -0.9
3,083,627 + +0.5
3,083,628 - -0.3
3,083,628 - +0.4
3,083,649 - -1.0
3,083,687 + -0.8
3,083,687 + +1.4
3,083,687 + -0.7
3,083,688 - -2.5
3,083,991 + SMc03933 0.24 +0.3
3,083,991 + SMc03933 0.24 -0.4
3,083,992 - SMc03933 0.24 -0.1
3,083,992 - SMc03933 0.24 +0.9
3,084,027 - SMc03933 0.27 -4.1
3,084,035 + SMc03933 0.28 -0.3
3,084,036 - SMc03933 0.28 +0.4
3,084,087 + SMc03933 0.32 +0.1
3,084,087 + SMc03933 0.32 +0.5
3,084,087 + SMc03933 0.32 +0.7
3,084,087 + SMc03933 0.32 +0.6
3,084,089 + SMc03933 0.32 -0.0
3,084,089 + SMc03933 0.32 +0.6
3,084,089 + SMc03933 0.32 +1.0
3,084,090 - SMc03933 0.32 +0.6
3,084,090 - SMc03933 0.32 -0.9
3,084,090 - SMc03933 0.32 +0.3
3,084,090 - SMc03933 0.32 +0.8
3,084,090 - SMc03933 0.32 -0.2
3,084,090 - SMc03933 0.32 +0.7
3,084,270 + SMc03933 0.47 +0.6
3,084,368 + SMc03933 0.54 +0.8
3,084,454 + SMc03933 0.61 +0.6
3,084,454 + SMc03933 0.61 +0.4
3,084,455 - SMc03933 0.61 +0.4
3,084,602 + SMc03933 0.73 -0.5
3,084,602 + SMc03933 0.73 +0.3
3,084,603 - SMc03933 0.73 +1.1
3,084,614 + SMc03933 0.74 +1.6
3,084,614 + SMc03933 0.74 +0.3
3,084,615 - SMc03933 0.74 +1.0
3,084,615 - SMc03933 0.74 +0.4
3,084,615 - SMc03933 0.74 -0.1
3,084,615 - SMc03933 0.74 -1.7
3,084,662 + SMc03933 0.78 +0.7
3,084,662 + SMc03933 0.78 +0.5
3,084,663 - SMc03933 0.78 +0.2
3,084,683 + SMc03933 0.80 +0.4
3,084,684 - SMc03933 0.80 +0.1
3,084,689 + SMc03933 0.80 +0.3
3,084,689 + SMc03933 0.80 -0.1
3,084,689 + SMc03933 0.80 +0.2
3,084,689 + SMc03933 0.80 +1.0
3,084,690 - SMc03933 0.80 +0.1
3,084,690 - SMc03933 0.80 +0.1
3,084,690 - SMc03933 0.80 +1.0
3,084,690 - SMc03933 0.80 -0.1
3,084,792 - SMc03933 0.88 -3.6
3,084,792 - SMc03933 0.88 +0.9
3,084,794 + SMc03933 0.88 +0.4
3,084,794 + SMc03933 0.88 +1.2
3,084,794 + SMc03933 0.88 +0.8
3,084,795 - SMc03933 0.88 +0.3
3,084,795 - SMc03933 0.88 +0.5
3,084,826 + +1.6
3,084,826 + +0.6
3,084,827 - +1.5
3,084,842 + -0.1
3,084,843 - -0.4
3,084,843 - +0.1
3,084,929 + +0.6
3,084,930 - -1.4
3,084,930 - -0.1
3,084,930 - -2.4
3,084,948 + -0.3
3,084,948 + +1.9
3,084,948 + +0.3
3,084,948 + +0.7
3,084,949 - -0.1
3,084,949 - +0.3
3,084,960 + -0.7
3,085,550 - +0.5
3,085,885 + SMc03935 0.27 +0.0

Or see this region's nucleotide sequence