Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03931 and SMc03932 overlap by 4 nucleotides SMc03932 and SMc03933 are separated by 114 nucleotides SMc03933 and SMc03934 are separated by 263 nucleotides SMc03934 and SMc03935 are separated by 187 nucleotides
SMc03931: SMc03931 - sarcosine oxidase subunit alpha, at 3,080,240 to 3,083,233
SMc03931
SMc03932: SMc03932 - sarcosine oxidase subunit delta, at 3,083,230 to 3,083,571
SMc03932
SMc03933: SMc03933 - sarcosine oxidase subunit B protein, at 3,083,686 to 3,084,939
SMc03933
SMc03934: SMc03934 - 30S ribosomal protein S21, at 3,085,203 to 3,085,457
SMc03934
SMc03935: SMc03935 - hypothetical protein, at 3,085,645 to 3,086,532
SMc03935
Position (kb)
3083
3084
3085 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 3082.732 kb on - strand, within SMc03931 at 3082.744 kb on - strand, within SMc03931 at 3082.809 kb on + strand, within SMc03931 at 3082.809 kb on + strand, within SMc03931 at 3082.810 kb on - strand, within SMc03931 at 3082.810 kb on - strand, within SMc03931 at 3082.810 kb on - strand, within SMc03931 at 3082.810 kb on - strand, within SMc03931 at 3082.851 kb on + strand, within SMc03931 at 3082.851 kb on + strand, within SMc03931 at 3082.851 kb on + strand, within SMc03931 at 3082.854 kb on + strand, within SMc03931 at 3082.855 kb on - strand, within SMc03931 at 3082.855 kb on - strand, within SMc03931 at 3083.074 kb on - strand at 3083.259 kb on - strand at 3083.324 kb on + strand, within SMc03932 at 3083.325 kb on - strand, within SMc03932 at 3083.325 kb on - strand, within SMc03932 at 3083.445 kb on - strand, within SMc03932 at 3083.496 kb on + strand, within SMc03932 at 3083.496 kb on + strand, within SMc03932 at 3083.550 kb on - strand at 3083.627 kb on + strand at 3083.627 kb on + strand at 3083.627 kb on + strand at 3083.628 kb on - strand at 3083.628 kb on - strand at 3083.649 kb on - strand at 3083.687 kb on + strand at 3083.687 kb on + strand at 3083.687 kb on + strand at 3083.688 kb on - strand at 3083.991 kb on + strand, within SMc03933 at 3083.991 kb on + strand, within SMc03933 at 3083.992 kb on - strand, within SMc03933 at 3083.992 kb on - strand, within SMc03933 at 3084.027 kb on - strand, within SMc03933 at 3084.035 kb on + strand, within SMc03933 at 3084.036 kb on - strand, within SMc03933 at 3084.087 kb on + strand, within SMc03933 at 3084.087 kb on + strand, within SMc03933 at 3084.087 kb on + strand, within SMc03933 at 3084.087 kb on + strand, within SMc03933 at 3084.089 kb on + strand, within SMc03933 at 3084.089 kb on + strand, within SMc03933 at 3084.089 kb on + strand, within SMc03933 at 3084.090 kb on - strand, within SMc03933 at 3084.090 kb on - strand, within SMc03933 at 3084.090 kb on - strand, within SMc03933 at 3084.090 kb on - strand, within SMc03933 at 3084.090 kb on - strand, within SMc03933 at 3084.090 kb on - strand, within SMc03933 at 3084.270 kb on + strand, within SMc03933 at 3084.368 kb on + strand, within SMc03933 at 3084.454 kb on + strand, within SMc03933 at 3084.454 kb on + strand, within SMc03933 at 3084.455 kb on - strand, within SMc03933 at 3084.602 kb on + strand, within SMc03933 at 3084.602 kb on + strand, within SMc03933 at 3084.603 kb on - strand, within SMc03933 at 3084.614 kb on + strand, within SMc03933 at 3084.614 kb on + strand, within SMc03933 at 3084.615 kb on - strand, within SMc03933 at 3084.615 kb on - strand, within SMc03933 at 3084.615 kb on - strand, within SMc03933 at 3084.615 kb on - strand, within SMc03933 at 3084.662 kb on + strand, within SMc03933 at 3084.662 kb on + strand, within SMc03933 at 3084.663 kb on - strand, within SMc03933 at 3084.683 kb on + strand, within SMc03933 at 3084.684 kb on - strand, within SMc03933 at 3084.689 kb on + strand, within SMc03933 at 3084.689 kb on + strand, within SMc03933 at 3084.689 kb on + strand, within SMc03933 at 3084.689 kb on + strand, within SMc03933 at 3084.690 kb on - strand, within SMc03933 at 3084.690 kb on - strand, within SMc03933 at 3084.690 kb on - strand, within SMc03933 at 3084.690 kb on - strand, within SMc03933 at 3084.792 kb on - strand, within SMc03933 at 3084.792 kb on - strand, within SMc03933 at 3084.794 kb on + strand, within SMc03933 at 3084.794 kb on + strand, within SMc03933 at 3084.794 kb on + strand, within SMc03933 at 3084.795 kb on - strand, within SMc03933 at 3084.795 kb on - strand, within SMc03933 at 3084.826 kb on + strand at 3084.826 kb on + strand at 3084.827 kb on - strand at 3084.842 kb on + strand at 3084.843 kb on - strand at 3084.843 kb on - strand at 3084.929 kb on + strand at 3084.930 kb on - strand at 3084.930 kb on - strand at 3084.930 kb on - strand at 3084.948 kb on + strand at 3084.948 kb on + strand at 3084.948 kb on + strand at 3084.948 kb on + strand at 3084.949 kb on - strand at 3084.949 kb on - strand at 3084.960 kb on + strand at 3085.550 kb on - strand at 3085.885 kb on + strand, within SMc03935
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 3,082,732 - SMc03931 0.83 -0.8 3,082,744 - SMc03931 0.84 +0.5 3,082,809 + SMc03931 0.86 -3.7 3,082,809 + SMc03931 0.86 +0.3 3,082,810 - SMc03931 0.86 +0.0 3,082,810 - SMc03931 0.86 +0.5 3,082,810 - SMc03931 0.86 +0.0 3,082,810 - SMc03931 0.86 +1.2 3,082,851 + SMc03931 0.87 +0.1 3,082,851 + SMc03931 0.87 -0.9 3,082,851 + SMc03931 0.87 +0.7 3,082,854 + SMc03931 0.87 -2.2 3,082,855 - SMc03931 0.87 +0.4 3,082,855 - SMc03931 0.87 -0.4 3,083,074 - +4.5 3,083,259 - +0.8 3,083,324 + SMc03932 0.27 +0.7 3,083,325 - SMc03932 0.28 +0.6 3,083,325 - SMc03932 0.28 +1.5 3,083,445 - SMc03932 0.63 -0.1 3,083,496 + SMc03932 0.78 +0.2 3,083,496 + SMc03932 0.78 +1.2 3,083,550 - -0.1 3,083,627 + -0.0 3,083,627 + -0.9 3,083,627 + +0.5 3,083,628 - -0.3 3,083,628 - +0.4 3,083,649 - -1.0 3,083,687 + -0.8 3,083,687 + +1.4 3,083,687 + -0.7 3,083,688 - -2.5 3,083,991 + SMc03933 0.24 +0.3 3,083,991 + SMc03933 0.24 -0.4 3,083,992 - SMc03933 0.24 -0.1 3,083,992 - SMc03933 0.24 +0.9 3,084,027 - SMc03933 0.27 -4.1 3,084,035 + SMc03933 0.28 -0.3 3,084,036 - SMc03933 0.28 +0.4 3,084,087 + SMc03933 0.32 +0.1 3,084,087 + SMc03933 0.32 +0.5 3,084,087 + SMc03933 0.32 +0.7 3,084,087 + SMc03933 0.32 +0.6 3,084,089 + SMc03933 0.32 -0.0 3,084,089 + SMc03933 0.32 +0.6 3,084,089 + SMc03933 0.32 +1.0 3,084,090 - SMc03933 0.32 +0.6 3,084,090 - SMc03933 0.32 -0.9 3,084,090 - SMc03933 0.32 +0.3 3,084,090 - SMc03933 0.32 +0.8 3,084,090 - SMc03933 0.32 -0.2 3,084,090 - SMc03933 0.32 +0.7 3,084,270 + SMc03933 0.47 +0.6 3,084,368 + SMc03933 0.54 +0.8 3,084,454 + SMc03933 0.61 +0.6 3,084,454 + SMc03933 0.61 +0.4 3,084,455 - SMc03933 0.61 +0.4 3,084,602 + SMc03933 0.73 -0.5 3,084,602 + SMc03933 0.73 +0.3 3,084,603 - SMc03933 0.73 +1.1 3,084,614 + SMc03933 0.74 +1.6 3,084,614 + SMc03933 0.74 +0.3 3,084,615 - SMc03933 0.74 +1.0 3,084,615 - SMc03933 0.74 +0.4 3,084,615 - SMc03933 0.74 -0.1 3,084,615 - SMc03933 0.74 -1.7 3,084,662 + SMc03933 0.78 +0.7 3,084,662 + SMc03933 0.78 +0.5 3,084,663 - SMc03933 0.78 +0.2 3,084,683 + SMc03933 0.80 +0.4 3,084,684 - SMc03933 0.80 +0.1 3,084,689 + SMc03933 0.80 +0.3 3,084,689 + SMc03933 0.80 -0.1 3,084,689 + SMc03933 0.80 +0.2 3,084,689 + SMc03933 0.80 +1.0 3,084,690 - SMc03933 0.80 +0.1 3,084,690 - SMc03933 0.80 +0.1 3,084,690 - SMc03933 0.80 +1.0 3,084,690 - SMc03933 0.80 -0.1 3,084,792 - SMc03933 0.88 -3.6 3,084,792 - SMc03933 0.88 +0.9 3,084,794 + SMc03933 0.88 +0.4 3,084,794 + SMc03933 0.88 +1.2 3,084,794 + SMc03933 0.88 +0.8 3,084,795 - SMc03933 0.88 +0.3 3,084,795 - SMc03933 0.88 +0.5 3,084,826 + +1.6 3,084,826 + +0.6 3,084,827 - +1.5 3,084,842 + -0.1 3,084,843 - -0.4 3,084,843 - +0.1 3,084,929 + +0.6 3,084,930 - -1.4 3,084,930 - -0.1 3,084,930 - -2.4 3,084,948 + -0.3 3,084,948 + +1.9 3,084,948 + +0.3 3,084,948 + +0.7 3,084,949 - -0.1 3,084,949 - +0.3 3,084,960 + -0.7 3,085,550 - +0.5 3,085,885 + SMc03935 0.27 +0.0
Or see this region's nucleotide sequence