Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03929 and SMc03930 are separated by 195 nucleotides SMc03930 and SMc03931 overlap by 8 nucleotides SMc03931 and SMc03932 overlap by 4 nucleotides SMc03932 and SMc03933 are separated by 114 nucleotides
SMc03929: SMc03929 - zinc-type alcohol dehydrogenase transmembrane protein, at 3,078,322 to 3,079,497
SMc03929
SMc03930: SMc03930 - sarcosine oxidase subunit gamma, at 3,079,693 to 3,080,247
SMc03930
SMc03931: SMc03931 - sarcosine oxidase subunit alpha, at 3,080,240 to 3,083,233
SMc03931
SMc03932: SMc03932 - sarcosine oxidase subunit delta, at 3,083,230 to 3,083,571
SMc03932
SMc03933: SMc03933 - sarcosine oxidase subunit B protein, at 3,083,686 to 3,084,939
SMc03933
Position (kb)
3080
3081
3082
3083
3084 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 3079.390 kb on - strand at 3079.397 kb on + strand at 3079.398 kb on - strand at 3079.398 kb on - strand at 3079.590 kb on + strand at 3079.590 kb on + strand at 3079.590 kb on + strand at 3079.593 kb on + strand at 3079.593 kb on + strand at 3079.776 kb on + strand, within SMc03930 at 3080.325 kb on + strand at 3080.326 kb on - strand at 3080.326 kb on - strand at 3080.326 kb on - strand at 3080.403 kb on + strand at 3080.403 kb on + strand at 3080.641 kb on + strand, within SMc03931 at 3080.662 kb on - strand, within SMc03931 at 3080.864 kb on - strand, within SMc03931 at 3081.012 kb on + strand, within SMc03931 at 3081.012 kb on + strand, within SMc03931 at 3081.012 kb on + strand, within SMc03931 at 3081.013 kb on - strand, within SMc03931 at 3081.183 kb on + strand, within SMc03931 at 3081.183 kb on + strand, within SMc03931 at 3081.183 kb on + strand, within SMc03931 at 3081.184 kb on - strand, within SMc03931 at 3081.184 kb on - strand, within SMc03931 at 3081.184 kb on - strand, within SMc03931 at 3081.308 kb on - strand, within SMc03931 at 3081.328 kb on - strand, within SMc03931 at 3081.469 kb on + strand, within SMc03931 at 3081.469 kb on + strand, within SMc03931 at 3081.470 kb on - strand, within SMc03931 at 3081.472 kb on - strand, within SMc03931 at 3081.472 kb on - strand, within SMc03931 at 3081.697 kb on + strand, within SMc03931 at 3081.897 kb on + strand, within SMc03931 at 3081.897 kb on + strand, within SMc03931 at 3081.897 kb on + strand, within SMc03931 at 3081.898 kb on - strand, within SMc03931 at 3082.240 kb on + strand, within SMc03931 at 3082.240 kb on + strand, within SMc03931 at 3082.241 kb on - strand, within SMc03931 at 3082.242 kb on + strand, within SMc03931 at 3082.242 kb on + strand, within SMc03931 at 3082.242 kb on + strand, within SMc03931 at 3082.243 kb on - strand, within SMc03931 at 3082.243 kb on - strand, within SMc03931 at 3082.243 kb on - strand, within SMc03931 at 3082.287 kb on + strand, within SMc03931 at 3082.287 kb on + strand, within SMc03931 at 3082.288 kb on - strand, within SMc03931 at 3082.482 kb on + strand, within SMc03931 at 3082.482 kb on + strand, within SMc03931 at 3082.482 kb on + strand, within SMc03931 at 3082.483 kb on - strand, within SMc03931 at 3082.602 kb on + strand, within SMc03931 at 3082.603 kb on - strand, within SMc03931 at 3082.732 kb on - strand, within SMc03931 at 3082.744 kb on - strand, within SMc03931 at 3082.809 kb on + strand, within SMc03931 at 3082.809 kb on + strand, within SMc03931 at 3082.810 kb on - strand, within SMc03931 at 3082.810 kb on - strand, within SMc03931 at 3082.810 kb on - strand, within SMc03931 at 3082.810 kb on - strand, within SMc03931 at 3082.851 kb on + strand, within SMc03931 at 3082.851 kb on + strand, within SMc03931 at 3082.851 kb on + strand, within SMc03931 at 3082.854 kb on + strand, within SMc03931 at 3082.855 kb on - strand, within SMc03931 at 3082.855 kb on - strand, within SMc03931 at 3083.074 kb on - strand at 3083.259 kb on - strand at 3083.324 kb on + strand, within SMc03932 at 3083.325 kb on - strand, within SMc03932 at 3083.325 kb on - strand, within SMc03932 at 3083.445 kb on - strand, within SMc03932 at 3083.496 kb on + strand, within SMc03932 at 3083.496 kb on + strand, within SMc03932 at 3083.550 kb on - strand at 3083.627 kb on + strand at 3083.627 kb on + strand at 3083.627 kb on + strand at 3083.628 kb on - strand at 3083.628 kb on - strand at 3083.649 kb on - strand at 3083.687 kb on + strand at 3083.687 kb on + strand at 3083.687 kb on + strand at 3083.688 kb on - strand at 3083.991 kb on + strand, within SMc03933 at 3083.991 kb on + strand, within SMc03933 at 3083.992 kb on - strand, within SMc03933 at 3083.992 kb on - strand, within SMc03933 at 3084.027 kb on - strand, within SMc03933 at 3084.035 kb on + strand, within SMc03933 at 3084.036 kb on - strand, within SMc03933 at 3084.087 kb on + strand, within SMc03933 at 3084.087 kb on + strand, within SMc03933 at 3084.087 kb on + strand, within SMc03933 at 3084.087 kb on + strand, within SMc03933 at 3084.089 kb on + strand, within SMc03933 at 3084.089 kb on + strand, within SMc03933 at 3084.089 kb on + strand, within SMc03933 at 3084.090 kb on - strand, within SMc03933 at 3084.090 kb on - strand, within SMc03933 at 3084.090 kb on - strand, within SMc03933 at 3084.090 kb on - strand, within SMc03933 at 3084.090 kb on - strand, within SMc03933 at 3084.090 kb on - strand, within SMc03933
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 3,079,390 - -0.1 3,079,397 + +0.0 3,079,398 - -1.9 3,079,398 - -0.5 3,079,590 + +1.4 3,079,590 + +0.7 3,079,590 + -0.1 3,079,593 + -0.4 3,079,593 + +0.0 3,079,776 + SMc03930 0.15 -0.4 3,080,325 + +1.4 3,080,326 - +0.7 3,080,326 - +0.4 3,080,326 - +0.8 3,080,403 + -0.2 3,080,403 + +2.0 3,080,641 + SMc03931 0.13 +1.1 3,080,662 - SMc03931 0.14 +0.5 3,080,864 - SMc03931 0.21 +0.4 3,081,012 + SMc03931 0.26 +0.8 3,081,012 + SMc03931 0.26 -0.7 3,081,012 + SMc03931 0.26 -0.2 3,081,013 - SMc03931 0.26 -0.3 3,081,183 + SMc03931 0.31 +0.4 3,081,183 + SMc03931 0.31 +0.1 3,081,183 + SMc03931 0.31 +1.0 3,081,184 - SMc03931 0.32 +0.3 3,081,184 - SMc03931 0.32 +1.6 3,081,184 - SMc03931 0.32 +0.6 3,081,308 - SMc03931 0.36 +0.5 3,081,328 - SMc03931 0.36 -0.4 3,081,469 + SMc03931 0.41 -1.2 3,081,469 + SMc03931 0.41 +1.5 3,081,470 - SMc03931 0.41 -1.3 3,081,472 - SMc03931 0.41 +0.4 3,081,472 - SMc03931 0.41 +0.4 3,081,697 + SMc03931 0.49 -0.6 3,081,897 + SMc03931 0.55 +0.4 3,081,897 + SMc03931 0.55 -0.3 3,081,897 + SMc03931 0.55 +0.1 3,081,898 - SMc03931 0.55 +1.8 3,082,240 + SMc03931 0.67 -0.0 3,082,240 + SMc03931 0.67 +0.7 3,082,241 - SMc03931 0.67 +1.0 3,082,242 + SMc03931 0.67 +1.7 3,082,242 + SMc03931 0.67 +0.4 3,082,242 + SMc03931 0.67 +0.0 3,082,243 - SMc03931 0.67 +0.2 3,082,243 - SMc03931 0.67 +0.0 3,082,243 - SMc03931 0.67 +1.4 3,082,287 + SMc03931 0.68 +0.4 3,082,287 + SMc03931 0.68 +1.4 3,082,288 - SMc03931 0.68 +0.4 3,082,482 + SMc03931 0.75 +0.6 3,082,482 + SMc03931 0.75 +0.1 3,082,482 + SMc03931 0.75 +1.3 3,082,483 - SMc03931 0.75 +0.1 3,082,602 + SMc03931 0.79 +1.4 3,082,603 - SMc03931 0.79 +0.1 3,082,732 - SMc03931 0.83 -0.8 3,082,744 - SMc03931 0.84 +0.5 3,082,809 + SMc03931 0.86 -3.7 3,082,809 + SMc03931 0.86 +0.3 3,082,810 - SMc03931 0.86 +0.0 3,082,810 - SMc03931 0.86 +0.5 3,082,810 - SMc03931 0.86 +0.0 3,082,810 - SMc03931 0.86 +1.2 3,082,851 + SMc03931 0.87 +0.1 3,082,851 + SMc03931 0.87 -0.9 3,082,851 + SMc03931 0.87 +0.7 3,082,854 + SMc03931 0.87 -2.2 3,082,855 - SMc03931 0.87 +0.4 3,082,855 - SMc03931 0.87 -0.4 3,083,074 - +4.5 3,083,259 - +0.8 3,083,324 + SMc03932 0.27 +0.7 3,083,325 - SMc03932 0.28 +0.6 3,083,325 - SMc03932 0.28 +1.5 3,083,445 - SMc03932 0.63 -0.1 3,083,496 + SMc03932 0.78 +0.2 3,083,496 + SMc03932 0.78 +1.2 3,083,550 - -0.1 3,083,627 + -0.0 3,083,627 + -0.9 3,083,627 + +0.5 3,083,628 - -0.3 3,083,628 - +0.4 3,083,649 - -1.0 3,083,687 + -0.8 3,083,687 + +1.4 3,083,687 + -0.7 3,083,688 - -2.5 3,083,991 + SMc03933 0.24 +0.3 3,083,991 + SMc03933 0.24 -0.4 3,083,992 - SMc03933 0.24 -0.1 3,083,992 - SMc03933 0.24 +0.9 3,084,027 - SMc03933 0.27 -4.1 3,084,035 + SMc03933 0.28 -0.3 3,084,036 - SMc03933 0.28 +0.4 3,084,087 + SMc03933 0.32 +0.1 3,084,087 + SMc03933 0.32 +0.5 3,084,087 + SMc03933 0.32 +0.7 3,084,087 + SMc03933 0.32 +0.6 3,084,089 + SMc03933 0.32 -0.0 3,084,089 + SMc03933 0.32 +0.6 3,084,089 + SMc03933 0.32 +1.0 3,084,090 - SMc03933 0.32 +0.6 3,084,090 - SMc03933 0.32 -0.9 3,084,090 - SMc03933 0.32 +0.3 3,084,090 - SMc03933 0.32 +0.8 3,084,090 - SMc03933 0.32 -0.2 3,084,090 - SMc03933 0.32 +0.7
Or see this region's nucleotide sequence