Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03867 and SMc03868 are separated by 77 nucleotides SMc03868 and SMc03869 are separated by 268 nucleotides SMc03869 and SMc03870 are separated by 31 nucleotides
SMc03867: SMc03867 - hypothetical protein, at 3,531,518 to 3,532,168
SMc03867
SMc03868: SMc03868 - hypothetical protein, at 3,532,246 to 3,532,758
SMc03868
SMc03869: SMc03869 - thiamine transporter substrate binding subunit, at 3,533,027 to 3,534,055
SMc03869
SMc03870: SMc03870 - thiamine transporter membrane protein, at 3,534,087 to 3,535,694
SMc03870
Position (kb)
3533
3534
3535 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3532.289 kb on + strand at 3532.289 kb on + strand at 3532.340 kb on + strand, within SMc03868 at 3532.376 kb on + strand, within SMc03868 at 3532.376 kb on + strand, within SMc03868 at 3532.377 kb on - strand, within SMc03868 at 3532.377 kb on - strand, within SMc03868 at 3532.493 kb on - strand, within SMc03868 at 3532.706 kb on + strand, within SMc03868 at 3532.707 kb on - strand at 3532.837 kb on + strand at 3532.873 kb on - strand at 3532.964 kb on - strand at 3533.136 kb on - strand, within SMc03869 at 3533.136 kb on - strand, within SMc03869 at 3533.137 kb on + strand, within SMc03869 at 3533.137 kb on + strand, within SMc03869 at 3533.137 kb on + strand, within SMc03869 at 3533.138 kb on - strand, within SMc03869 at 3533.138 kb on - strand, within SMc03869 at 3533.141 kb on + strand, within SMc03869 at 3533.141 kb on + strand, within SMc03869 at 3533.141 kb on + strand, within SMc03869 at 3533.142 kb on - strand, within SMc03869 at 3533.142 kb on - strand, within SMc03869 at 3533.142 kb on - strand, within SMc03869 at 3533.142 kb on - strand, within SMc03869 at 3533.142 kb on - strand, within SMc03869 at 3533.222 kb on + strand, within SMc03869 at 3533.227 kb on - strand, within SMc03869 at 3533.229 kb on - strand, within SMc03869 at 3533.415 kb on + strand, within SMc03869 at 3533.416 kb on - strand, within SMc03869 at 3533.416 kb on - strand, within SMc03869 at 3533.420 kb on + strand, within SMc03869 at 3533.421 kb on - strand, within SMc03869 at 3533.426 kb on + strand, within SMc03869 at 3533.426 kb on + strand, within SMc03869 at 3533.426 kb on + strand, within SMc03869 at 3533.663 kb on + strand, within SMc03869 at 3533.664 kb on - strand, within SMc03869 at 3533.705 kb on + strand, within SMc03869 at 3533.705 kb on + strand, within SMc03869 at 3533.705 kb on + strand, within SMc03869 at 3533.706 kb on - strand, within SMc03869 at 3533.724 kb on - strand, within SMc03869 at 3533.783 kb on + strand, within SMc03869 at 3533.783 kb on + strand, within SMc03869 at 3533.785 kb on + strand, within SMc03869 at 3533.786 kb on - strand, within SMc03869 at 3533.786 kb on - strand, within SMc03869 at 3533.786 kb on - strand, within SMc03869 at 3534.207 kb on + strand at 3534.207 kb on + strand at 3534.207 kb on + strand at 3534.207 kb on + strand at 3534.207 kb on + strand at 3534.208 kb on - strand at 3534.208 kb on - strand at 3534.208 kb on - strand at 3534.208 kb on - strand at 3534.208 kb on - strand at 3534.208 kb on - strand at 3534.208 kb on - strand at 3534.209 kb on + strand at 3534.209 kb on + strand at 3534.209 kb on + strand at 3534.209 kb on + strand at 3534.209 kb on + strand at 3534.209 kb on + strand at 3534.210 kb on - strand at 3534.271 kb on + strand, within SMc03870 at 3534.271 kb on + strand, within SMc03870 at 3534.272 kb on - strand, within SMc03870 at 3534.468 kb on + strand, within SMc03870 at 3534.468 kb on + strand, within SMc03870 at 3534.468 kb on + strand, within SMc03870 at 3534.469 kb on - strand, within SMc03870 at 3534.469 kb on - strand, within SMc03870 at 3534.469 kb on - strand, within SMc03870 at 3534.469 kb on - strand, within SMc03870 at 3534.564 kb on + strand, within SMc03870 at 3534.564 kb on + strand, within SMc03870 at 3534.750 kb on + strand, within SMc03870 at 3534.751 kb on - strand, within SMc03870 at 3534.950 kb on - strand, within SMc03870 at 3534.995 kb on + strand, within SMc03870
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 3,532,289 + -0.8 3,532,289 + -0.2 3,532,340 + SMc03868 0.18 +0.2 3,532,376 + SMc03868 0.25 +1.4 3,532,376 + SMc03868 0.25 +2.6 3,532,377 - SMc03868 0.26 +2.3 3,532,377 - SMc03868 0.26 +0.6 3,532,493 - SMc03868 0.48 +0.9 3,532,706 + SMc03868 0.90 -0.9 3,532,707 - +1.3 3,532,837 + -0.5 3,532,873 - -0.6 3,532,964 - +0.1 3,533,136 - SMc03869 0.11 -1.2 3,533,136 - SMc03869 0.11 +0.6 3,533,137 + SMc03869 0.11 -1.4 3,533,137 + SMc03869 0.11 -0.1 3,533,137 + SMc03869 0.11 +0.9 3,533,138 - SMc03869 0.11 -0.0 3,533,138 - SMc03869 0.11 +0.8 3,533,141 + SMc03869 0.11 +0.1 3,533,141 + SMc03869 0.11 -2.4 3,533,141 + SMc03869 0.11 +1.1 3,533,142 - SMc03869 0.11 +0.1 3,533,142 - SMc03869 0.11 +0.2 3,533,142 - SMc03869 0.11 -2.1 3,533,142 - SMc03869 0.11 +0.4 3,533,142 - SMc03869 0.11 +0.3 3,533,222 + SMc03869 0.19 +0.6 3,533,227 - SMc03869 0.19 -1.8 3,533,229 - SMc03869 0.20 -1.2 3,533,415 + SMc03869 0.38 +0.1 3,533,416 - SMc03869 0.38 -1.0 3,533,416 - SMc03869 0.38 +1.0 3,533,420 + SMc03869 0.38 -0.4 3,533,421 - SMc03869 0.38 +0.6 3,533,426 + SMc03869 0.39 -0.4 3,533,426 + SMc03869 0.39 +0.9 3,533,426 + SMc03869 0.39 -0.2 3,533,663 + SMc03869 0.62 +0.1 3,533,664 - SMc03869 0.62 +1.3 3,533,705 + SMc03869 0.66 +0.5 3,533,705 + SMc03869 0.66 -0.2 3,533,705 + SMc03869 0.66 +0.4 3,533,706 - SMc03869 0.66 -0.1 3,533,724 - SMc03869 0.68 -0.2 3,533,783 + SMc03869 0.73 +0.3 3,533,783 + SMc03869 0.73 -0.0 3,533,785 + SMc03869 0.74 +0.7 3,533,786 - SMc03869 0.74 -0.1 3,533,786 - SMc03869 0.74 +0.1 3,533,786 - SMc03869 0.74 +0.1 3,534,207 + +1.2 3,534,207 + +0.7 3,534,207 + -0.0 3,534,207 + -0.2 3,534,207 + +0.4 3,534,208 - -1.3 3,534,208 - +0.5 3,534,208 - +1.9 3,534,208 - -0.4 3,534,208 - -0.2 3,534,208 - +2.1 3,534,208 - +0.0 3,534,209 + +0.4 3,534,209 + -0.2 3,534,209 + +1.4 3,534,209 + +0.0 3,534,209 + +0.0 3,534,209 + -0.7 3,534,210 - +1.0 3,534,271 + SMc03870 0.11 -0.8 3,534,271 + SMc03870 0.11 +0.8 3,534,272 - SMc03870 0.12 -1.5 3,534,468 + SMc03870 0.24 +1.2 3,534,468 + SMc03870 0.24 +0.0 3,534,468 + SMc03870 0.24 -0.7 3,534,469 - SMc03870 0.24 -0.4 3,534,469 - SMc03870 0.24 -0.2 3,534,469 - SMc03870 0.24 -0.3 3,534,469 - SMc03870 0.24 +0.2 3,534,564 + SMc03870 0.30 -0.2 3,534,564 + SMc03870 0.30 -0.5 3,534,750 + SMc03870 0.41 -1.3 3,534,751 - SMc03870 0.41 +1.6 3,534,950 - SMc03870 0.54 -0.4 3,534,995 + SMc03870 0.56 +0.0
Or see this region's nucleotide sequence