Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03820 and SMc03821 are separated by 246 nucleotides SMc03821 and SMc03822 are separated by 37 nucleotides SMc03822 and SMc03823 are separated by 112 nucleotides
SMc03820: SMc03820 - transcriptional regulator, at 3,486,754 to 3,487,437
SMc03820
SMc03821: SMc03821 - hypothetical protein, at 3,487,684 to 3,488,232
SMc03821
SMc03822: SMc03822 - hypothetical protein, at 3,488,270 to 3,488,821
SMc03822
SMc03823: SMc03823 - isopropylmalate isomerase large subunit, at 3,488,934 to 3,490,343
SMc03823
Position (kb)
3488
3489 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 3487.531 kb on - strand at 3487.539 kb on + strand at 3487.623 kb on + strand at 3487.624 kb on - strand at 3487.624 kb on - strand at 3487.625 kb on + strand at 3487.625 kb on + strand at 3487.625 kb on + strand at 3487.625 kb on + strand at 3487.625 kb on + strand at 3487.625 kb on + strand at 3487.626 kb on - strand at 3487.640 kb on - strand at 3487.981 kb on + strand, within SMc03821 at 3487.982 kb on - strand, within SMc03821 at 3487.982 kb on - strand, within SMc03821 at 3488.047 kb on + strand, within SMc03821 at 3488.047 kb on + strand, within SMc03821 at 3488.048 kb on - strand, within SMc03821 at 3488.340 kb on - strand at 3488.340 kb on - strand, within SMc03822 at 3488.340 kb on - strand, within SMc03822 at 3488.553 kb on + strand, within SMc03822 at 3488.553 kb on + strand, within SMc03822 at 3488.553 kb on + strand, within SMc03822 at 3488.553 kb on + strand, within SMc03822 at 3488.553 kb on + strand, within SMc03822 at 3488.554 kb on - strand, within SMc03822 at 3488.554 kb on - strand, within SMc03822 at 3488.879 kb on + strand at 3488.879 kb on + strand at 3488.880 kb on - strand at 3488.880 kb on - strand at 3488.880 kb on - strand at 3489.359 kb on + strand, within SMc03823 at 3489.359 kb on + strand, within SMc03823 at 3489.360 kb on - strand, within SMc03823 at 3489.360 kb on - strand, within SMc03823 at 3489.360 kb on - strand, within SMc03823 at 3489.360 kb on - strand, within SMc03823 at 3489.361 kb on + strand, within SMc03823 at 3489.361 kb on + strand, within SMc03823 at 3489.362 kb on - strand, within SMc03823 at 3489.362 kb on - strand, within SMc03823 at 3489.517 kb on + strand, within SMc03823 at 3489.518 kb on - strand, within SMc03823 at 3489.611 kb on - strand, within SMc03823 at 3489.698 kb on + strand, within SMc03823 at 3489.698 kb on + strand, within SMc03823 at 3489.699 kb on - strand, within SMc03823
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 3,487,531 - -0.4 3,487,539 + -2.0 3,487,623 + -0.1 3,487,624 - +0.1 3,487,624 - +0.3 3,487,625 + +0.2 3,487,625 + -1.6 3,487,625 + +0.0 3,487,625 + +0.9 3,487,625 + +0.1 3,487,625 + -0.3 3,487,626 - -0.7 3,487,640 - +0.6 3,487,981 + SMc03821 0.54 +0.9 3,487,982 - SMc03821 0.54 +0.2 3,487,982 - SMc03821 0.54 +0.2 3,488,047 + SMc03821 0.66 -0.3 3,488,047 + SMc03821 0.66 +0.2 3,488,048 - SMc03821 0.66 -1.5 3,488,340 - +2.3 3,488,340 - SMc03822 0.13 +0.9 3,488,340 - SMc03822 0.13 -0.2 3,488,553 + SMc03822 0.51 +2.3 3,488,553 + SMc03822 0.51 +0.4 3,488,553 + SMc03822 0.51 +0.6 3,488,553 + SMc03822 0.51 -0.3 3,488,553 + SMc03822 0.51 +0.1 3,488,554 - SMc03822 0.51 -0.5 3,488,554 - SMc03822 0.51 +0.4 3,488,879 + +0.1 3,488,879 + -0.3 3,488,880 - -0.7 3,488,880 - +0.0 3,488,880 - -0.2 3,489,359 + SMc03823 0.30 -4.2 3,489,359 + SMc03823 0.30 -1.3 3,489,360 - SMc03823 0.30 -2.8 3,489,360 - SMc03823 0.30 -0.9 3,489,360 - SMc03823 0.30 -4.6 3,489,360 - SMc03823 0.30 -4.3 3,489,361 + SMc03823 0.30 -1.1 3,489,361 + SMc03823 0.30 -4.3 3,489,362 - SMc03823 0.30 -5.1 3,489,362 - SMc03823 0.30 -3.7 3,489,517 + SMc03823 0.41 -4.5 3,489,518 - SMc03823 0.41 -4.4 3,489,611 - SMc03823 0.48 -2.9 3,489,698 + SMc03823 0.54 -4.0 3,489,698 + SMc03823 0.54 -4.0 3,489,699 - SMc03823 0.54 -4.3
Or see this region's nucleotide sequence