Strain Fitness in Sinorhizobium meliloti 1021 around SMc03822

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03820 and SMc03821 are separated by 246 nucleotidesSMc03821 and SMc03822 are separated by 37 nucleotidesSMc03822 and SMc03823 are separated by 112 nucleotides SMc03820: SMc03820 - transcriptional regulator, at 3,486,754 to 3,487,437 SMc03820 SMc03821: SMc03821 - hypothetical protein, at 3,487,684 to 3,488,232 SMc03821 SMc03822: SMc03822 - hypothetical protein, at 3,488,270 to 3,488,821 SMc03822 SMc03823: SMc03823 - isopropylmalate isomerase large subunit, at 3,488,934 to 3,490,343 SMc03823 Position (kb) 3488 3489Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3487.531 kb on - strandat 3487.539 kb on + strandat 3487.623 kb on + strandat 3487.624 kb on - strandat 3487.624 kb on - strandat 3487.625 kb on + strandat 3487.625 kb on + strandat 3487.625 kb on + strandat 3487.625 kb on + strandat 3487.625 kb on + strandat 3487.625 kb on + strandat 3487.626 kb on - strandat 3487.640 kb on - strandat 3487.981 kb on + strand, within SMc03821at 3487.982 kb on - strand, within SMc03821at 3487.982 kb on - strand, within SMc03821at 3488.047 kb on + strand, within SMc03821at 3488.047 kb on + strand, within SMc03821at 3488.048 kb on - strand, within SMc03821at 3488.340 kb on - strandat 3488.340 kb on - strand, within SMc03822at 3488.340 kb on - strand, within SMc03822at 3488.553 kb on + strand, within SMc03822at 3488.553 kb on + strand, within SMc03822at 3488.553 kb on + strand, within SMc03822at 3488.553 kb on + strand, within SMc03822at 3488.553 kb on + strand, within SMc03822at 3488.554 kb on - strand, within SMc03822at 3488.554 kb on - strand, within SMc03822at 3488.879 kb on + strandat 3488.879 kb on + strandat 3488.880 kb on - strandat 3488.880 kb on - strandat 3488.880 kb on - strandat 3489.359 kb on + strand, within SMc03823at 3489.359 kb on + strand, within SMc03823at 3489.360 kb on - strand, within SMc03823at 3489.360 kb on - strand, within SMc03823at 3489.360 kb on - strand, within SMc03823at 3489.360 kb on - strand, within SMc03823at 3489.361 kb on + strand, within SMc03823at 3489.361 kb on + strand, within SMc03823at 3489.362 kb on - strand, within SMc03823at 3489.362 kb on - strand, within SMc03823at 3489.517 kb on + strand, within SMc03823at 3489.518 kb on - strand, within SMc03823at 3489.611 kb on - strand, within SMc03823at 3489.698 kb on + strand, within SMc03823at 3489.698 kb on + strand, within SMc03823at 3489.699 kb on - strand, within SMc03823

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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3,487,531 - -0.4
3,487,539 + -2.0
3,487,623 + -0.1
3,487,624 - +0.1
3,487,624 - +0.3
3,487,625 + +0.2
3,487,625 + -1.6
3,487,625 + +0.0
3,487,625 + +0.9
3,487,625 + +0.1
3,487,625 + -0.3
3,487,626 - -0.7
3,487,640 - +0.6
3,487,981 + SMc03821 0.54 +0.9
3,487,982 - SMc03821 0.54 +0.2
3,487,982 - SMc03821 0.54 +0.2
3,488,047 + SMc03821 0.66 -0.3
3,488,047 + SMc03821 0.66 +0.2
3,488,048 - SMc03821 0.66 -1.5
3,488,340 - +2.3
3,488,340 - SMc03822 0.13 +0.9
3,488,340 - SMc03822 0.13 -0.2
3,488,553 + SMc03822 0.51 +2.3
3,488,553 + SMc03822 0.51 +0.4
3,488,553 + SMc03822 0.51 +0.6
3,488,553 + SMc03822 0.51 -0.3
3,488,553 + SMc03822 0.51 +0.1
3,488,554 - SMc03822 0.51 -0.5
3,488,554 - SMc03822 0.51 +0.4
3,488,879 + +0.1
3,488,879 + -0.3
3,488,880 - -0.7
3,488,880 - +0.0
3,488,880 - -0.2
3,489,359 + SMc03823 0.30 -4.2
3,489,359 + SMc03823 0.30 -1.3
3,489,360 - SMc03823 0.30 -2.8
3,489,360 - SMc03823 0.30 -0.9
3,489,360 - SMc03823 0.30 -4.6
3,489,360 - SMc03823 0.30 -4.3
3,489,361 + SMc03823 0.30 -1.1
3,489,361 + SMc03823 0.30 -4.3
3,489,362 - SMc03823 0.30 -5.1
3,489,362 - SMc03823 0.30 -3.7
3,489,517 + SMc03823 0.41 -4.5
3,489,518 - SMc03823 0.41 -4.4
3,489,611 - SMc03823 0.48 -2.9
3,489,698 + SMc03823 0.54 -4.0
3,489,698 + SMc03823 0.54 -4.0
3,489,699 - SMc03823 0.54 -4.3

Or see this region's nucleotide sequence