Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02606 and SMc02607 overlap by 4 nucleotides SMc02607 and SMc02608 are separated by 25 nucleotides SMc02608 and SMc02609 are separated by 94 nucleotides
SMc02606: SMc02606 - sarcosine oxidase subunit alpha, at 97,908 to 100,871
SMc02606
SMc02607: SMc02607 - sarcosine oxidase subunit delta, at 100,868 to 101,146
SMc02607
SMc02608: SMc02608 - sarcosine oxidase subunit beta, at 101,172 to 102,422
SMc02608
SMc02609: SMc02609 - transcriptional regulator, at 102,517 to 103,491
SMc02609
Position (kb) 101
102
103 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 100.387 kb on + strand, within SMc02606 at 100.388 kb on - strand, within SMc02606 at 100.408 kb on + strand, within SMc02606 at 100.453 kb on + strand, within SMc02606 at 100.453 kb on + strand, within SMc02606 at 100.453 kb on + strand, within SMc02606 at 100.454 kb on - strand, within SMc02606 at 100.496 kb on - strand, within SMc02606 at 100.498 kb on + strand, within SMc02606 at 100.499 kb on - strand, within SMc02606 at 100.600 kb on + strand at 100.601 kb on - strand at 100.601 kb on - strand at 100.601 kb on - strand at 100.714 kb on + strand at 100.861 kb on + strand at 100.861 kb on + strand at 100.861 kb on + strand at 100.862 kb on - strand at 101.332 kb on + strand, within SMc02608 at 101.332 kb on + strand, within SMc02608 at 101.332 kb on + strand, within SMc02608 at 101.333 kb on - strand, within SMc02608 at 101.333 kb on - strand, within SMc02608 at 101.333 kb on - strand, within SMc02608 at 101.353 kb on + strand, within SMc02608 at 101.353 kb on + strand, within SMc02608 at 101.353 kb on + strand, within SMc02608 at 101.354 kb on - strand, within SMc02608 at 101.364 kb on + strand, within SMc02608 at 101.415 kb on - strand, within SMc02608 at 101.528 kb on - strand, within SMc02608 at 101.582 kb on - strand, within SMc02608 at 101.582 kb on - strand, within SMc02608 at 101.857 kb on + strand, within SMc02608 at 101.857 kb on + strand, within SMc02608 at 101.858 kb on - strand, within SMc02608 at 101.858 kb on - strand, within SMc02608 at 101.981 kb on - strand, within SMc02608 at 102.034 kb on + strand, within SMc02608 at 102.034 kb on + strand, within SMc02608 at 102.148 kb on + strand, within SMc02608 at 102.175 kb on + strand, within SMc02608 at 102.176 kb on - strand, within SMc02608 at 102.225 kb on - strand, within SMc02608 at 102.226 kb on + strand, within SMc02608 at 102.226 kb on + strand, within SMc02608 at 102.227 kb on - strand, within SMc02608 at 102.227 kb on - strand, within SMc02608 at 102.280 kb on + strand, within SMc02608 at 102.280 kb on + strand, within SMc02608 at 102.280 kb on + strand, within SMc02608 at 102.281 kb on - strand, within SMc02608 at 102.281 kb on - strand, within SMc02608 at 102.281 kb on - strand, within SMc02608 at 102.281 kb on - strand, within SMc02608 at 102.437 kb on - strand at 102.458 kb on + strand at 102.592 kb on + strand at 102.649 kb on + strand, within SMc02609 at 102.750 kb on + strand, within SMc02609 at 102.750 kb on + strand, within SMc02609 at 102.796 kb on - strand, within SMc02609 at 102.858 kb on - strand, within SMc02609 at 102.858 kb on - strand, within SMc02609 at 103.099 kb on + strand, within SMc02609 at 103.100 kb on - strand, within SMc02609 at 103.394 kb on - strand at 103.394 kb on - strand at 103.394 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 100,387 + SMc02606 0.84 +0.3 100,388 - SMc02606 0.84 +0.0 100,408 + SMc02606 0.84 +0.4 100,453 + SMc02606 0.86 -2.0 100,453 + SMc02606 0.86 -0.8 100,453 + SMc02606 0.86 -0.3 100,454 - SMc02606 0.86 +0.1 100,496 - SMc02606 0.87 +1.2 100,498 + SMc02606 0.87 +0.2 100,499 - SMc02606 0.87 -0.6 100,600 + -0.6 100,601 - +1.6 100,601 - +0.7 100,601 - -0.7 100,714 + +0.4 100,861 + -0.1 100,861 + +0.6 100,861 + -0.9 100,862 - +0.5 101,332 + SMc02608 0.13 +0.1 101,332 + SMc02608 0.13 -2.7 101,332 + SMc02608 0.13 +0.1 101,333 - SMc02608 0.13 -0.5 101,333 - SMc02608 0.13 -1.6 101,333 - SMc02608 0.13 +0.1 101,353 + SMc02608 0.14 +1.0 101,353 + SMc02608 0.14 -0.4 101,353 + SMc02608 0.14 -0.0 101,354 - SMc02608 0.15 -3.4 101,364 + SMc02608 0.15 +0.1 101,415 - SMc02608 0.19 +2.0 101,528 - SMc02608 0.28 +0.2 101,582 - SMc02608 0.33 -0.9 101,582 - SMc02608 0.33 -0.0 101,857 + SMc02608 0.55 +0.4 101,857 + SMc02608 0.55 -0.8 101,858 - SMc02608 0.55 +0.0 101,858 - SMc02608 0.55 -1.4 101,981 - SMc02608 0.65 -1.2 102,034 + SMc02608 0.69 +0.0 102,034 + SMc02608 0.69 -0.2 102,148 + SMc02608 0.78 -0.6 102,175 + SMc02608 0.80 +0.9 102,176 - SMc02608 0.80 -1.0 102,225 - SMc02608 0.84 +1.2 102,226 + SMc02608 0.84 +0.8 102,226 + SMc02608 0.84 +0.3 102,227 - SMc02608 0.84 +0.3 102,227 - SMc02608 0.84 +0.2 102,280 + SMc02608 0.89 -0.7 102,280 + SMc02608 0.89 -0.0 102,280 + SMc02608 0.89 -0.6 102,281 - SMc02608 0.89 +0.3 102,281 - SMc02608 0.89 -0.4 102,281 - SMc02608 0.89 -0.2 102,281 - SMc02608 0.89 +0.1 102,437 - -0.5 102,458 + -1.8 102,592 + +0.3 102,649 + SMc02609 0.14 +2.6 102,750 + SMc02609 0.24 -0.2 102,750 + SMc02609 0.24 -1.2 102,796 - SMc02609 0.29 +0.5 102,858 - SMc02609 0.35 +1.2 102,858 - SMc02609 0.35 -0.1 103,099 + SMc02609 0.60 -0.9 103,100 - SMc02609 0.60 +0.6 103,394 - -0.2 103,394 - +0.0 103,394 - -0.1
Or see this region's nucleotide sequence