Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02604 and SMc02605 are separated by 22 nucleotides SMc02605 and SMc02606 overlap by 8 nucleotides SMc02606 and SMc02607 overlap by 4 nucleotides SMc02607 and SMc02608 are separated by 25 nucleotides
SMc02604: SMc02604 - bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase, at 96,439 to 97,359
SMc02604
SMc02605: SMc02605 - sarcosine oxidase subunit gamma, at 97,382 to 97,915
SMc02605
SMc02606: SMc02606 - sarcosine oxidase subunit alpha, at 97,908 to 100,871
SMc02606
SMc02607: SMc02607 - sarcosine oxidase subunit delta, at 100,868 to 101,146
SMc02607
SMc02608: SMc02608 - sarcosine oxidase subunit beta, at 101,172 to 102,422
SMc02608
Position (kb) 97
98
99
100
101 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 97.214 kb on + strand, within SMc02604 at 97.214 kb on + strand, within SMc02604 at 97.215 kb on - strand, within SMc02604 at 98.092 kb on + strand at 98.093 kb on - strand at 98.459 kb on - strand, within SMc02606 at 98.562 kb on + strand, within SMc02606 at 98.562 kb on + strand, within SMc02606 at 98.563 kb on - strand, within SMc02606 at 98.563 kb on - strand, within SMc02606 at 98.563 kb on - strand, within SMc02606 at 98.563 kb on - strand, within SMc02606 at 98.564 kb on + strand, within SMc02606 at 98.564 kb on + strand, within SMc02606 at 98.564 kb on + strand, within SMc02606 at 98.720 kb on - strand, within SMc02606 at 98.807 kb on + strand, within SMc02606 at 98.807 kb on + strand, within SMc02606 at 98.808 kb on - strand, within SMc02606 at 98.808 kb on - strand, within SMc02606 at 98.808 kb on - strand, within SMc02606 at 98.808 kb on - strand, within SMc02606 at 98.859 kb on + strand, within SMc02606 at 99.271 kb on + strand, within SMc02606 at 99.272 kb on - strand, within SMc02606 at 99.299 kb on - strand, within SMc02606 at 99.375 kb on - strand, within SMc02606 at 99.408 kb on + strand, within SMc02606 at 99.409 kb on - strand, within SMc02606 at 99.866 kb on + strand, within SMc02606 at 99.866 kb on + strand, within SMc02606 at 99.868 kb on + strand, within SMc02606 at 99.934 kb on + strand, within SMc02606 at 99.935 kb on - strand, within SMc02606 at 100.152 kb on + strand, within SMc02606 at 100.387 kb on + strand, within SMc02606 at 100.388 kb on - strand, within SMc02606 at 100.408 kb on + strand, within SMc02606 at 100.453 kb on + strand, within SMc02606 at 100.453 kb on + strand, within SMc02606 at 100.453 kb on + strand, within SMc02606 at 100.454 kb on - strand, within SMc02606 at 100.496 kb on - strand, within SMc02606 at 100.498 kb on + strand, within SMc02606 at 100.499 kb on - strand, within SMc02606 at 100.600 kb on + strand at 100.601 kb on - strand at 100.601 kb on - strand at 100.601 kb on - strand at 100.714 kb on + strand at 100.861 kb on + strand at 100.861 kb on + strand at 100.861 kb on + strand at 100.862 kb on - strand at 101.332 kb on + strand, within SMc02608 at 101.332 kb on + strand, within SMc02608 at 101.332 kb on + strand, within SMc02608 at 101.333 kb on - strand, within SMc02608 at 101.333 kb on - strand, within SMc02608 at 101.333 kb on - strand, within SMc02608 at 101.353 kb on + strand, within SMc02608 at 101.353 kb on + strand, within SMc02608 at 101.353 kb on + strand, within SMc02608 at 101.354 kb on - strand, within SMc02608 at 101.364 kb on + strand, within SMc02608 at 101.415 kb on - strand, within SMc02608 at 101.528 kb on - strand, within SMc02608 at 101.582 kb on - strand, within SMc02608 at 101.582 kb on - strand, within SMc02608 at 101.857 kb on + strand, within SMc02608 at 101.857 kb on + strand, within SMc02608 at 101.858 kb on - strand, within SMc02608 at 101.858 kb on - strand, within SMc02608
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 97,214 + SMc02604 0.84 -0.5 97,214 + SMc02604 0.84 -2.7 97,215 - SMc02604 0.84 +1.1 98,092 + +0.0 98,093 - -0.5 98,459 - SMc02606 0.19 +1.6 98,562 + SMc02606 0.22 -0.5 98,562 + SMc02606 0.22 -0.4 98,563 - SMc02606 0.22 -0.2 98,563 - SMc02606 0.22 +1.2 98,563 - SMc02606 0.22 +0.1 98,563 - SMc02606 0.22 +0.2 98,564 + SMc02606 0.22 +0.1 98,564 + SMc02606 0.22 -0.8 98,564 + SMc02606 0.22 -0.1 98,720 - SMc02606 0.27 -0.8 98,807 + SMc02606 0.30 -0.3 98,807 + SMc02606 0.30 -0.4 98,808 - SMc02606 0.30 +0.6 98,808 - SMc02606 0.30 +0.3 98,808 - SMc02606 0.30 -1.9 98,808 - SMc02606 0.30 +1.2 98,859 + SMc02606 0.32 +1.0 99,271 + SMc02606 0.46 -1.9 99,272 - SMc02606 0.46 +0.2 99,299 - SMc02606 0.47 +0.4 99,375 - SMc02606 0.49 -0.2 99,408 + SMc02606 0.51 -3.3 99,409 - SMc02606 0.51 -0.2 99,866 + SMc02606 0.66 -0.0 99,866 + SMc02606 0.66 +0.9 99,868 + SMc02606 0.66 +0.6 99,934 + SMc02606 0.68 -1.0 99,935 - SMc02606 0.68 -2.6 100,152 + SMc02606 0.76 -0.8 100,387 + SMc02606 0.84 +0.3 100,388 - SMc02606 0.84 +0.0 100,408 + SMc02606 0.84 +0.4 100,453 + SMc02606 0.86 -2.0 100,453 + SMc02606 0.86 -0.8 100,453 + SMc02606 0.86 -0.3 100,454 - SMc02606 0.86 +0.1 100,496 - SMc02606 0.87 +1.2 100,498 + SMc02606 0.87 +0.2 100,499 - SMc02606 0.87 -0.6 100,600 + -0.6 100,601 - +1.6 100,601 - +0.7 100,601 - -0.7 100,714 + +0.4 100,861 + -0.1 100,861 + +0.6 100,861 + -0.9 100,862 - +0.5 101,332 + SMc02608 0.13 +0.1 101,332 + SMc02608 0.13 -2.7 101,332 + SMc02608 0.13 +0.1 101,333 - SMc02608 0.13 -0.5 101,333 - SMc02608 0.13 -1.6 101,333 - SMc02608 0.13 +0.1 101,353 + SMc02608 0.14 +1.0 101,353 + SMc02608 0.14 -0.4 101,353 + SMc02608 0.14 -0.0 101,354 - SMc02608 0.15 -3.4 101,364 + SMc02608 0.15 +0.1 101,415 - SMc02608 0.19 +2.0 101,528 - SMc02608 0.28 +0.2 101,582 - SMc02608 0.33 -0.9 101,582 - SMc02608 0.33 -0.0 101,857 + SMc02608 0.55 +0.4 101,857 + SMc02608 0.55 -0.8 101,858 - SMc02608 0.55 +0.0 101,858 - SMc02608 0.55 -1.4
Or see this region's nucleotide sequence