Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02438 and SMc02439 are separated by 348 nucleotides SMc02439 and SMc02440 are separated by 151 nucleotides SMc02440 and SMc02441 are separated by 12 nucleotides
SMc02438: SMc02438 - aspartate kinase, at 2,822,611 to 2,823,885
SMc02438
SMc02439: SMc02439 - hypothetical protein, at 2,824,234 to 2,824,779
SMc02439
SMc02440: SMc02440 - 3-demethylubiquinone-9 3-methyltransferase, at 2,824,931 to 2,825,677
SMc02440
SMc02441: SMc02441 - hypothetical protein, at 2,825,690 to 2,826,118
SMc02441
Position (kb)
2824
2825 Strain fitness (log2 ratio)
-1
0
1 at 2823.900 kb on - strand at 2824.336 kb on + strand, within SMc02439 at 2824.336 kb on + strand, within SMc02439 at 2824.336 kb on + strand, within SMc02439 at 2824.336 kb on + strand, within SMc02439 at 2824.337 kb on - strand, within SMc02439 at 2824.337 kb on - strand, within SMc02439 at 2824.337 kb on - strand, within SMc02439 at 2824.390 kb on + strand, within SMc02439 at 2824.390 kb on + strand, within SMc02439 at 2824.391 kb on - strand, within SMc02439 at 2824.391 kb on - strand, within SMc02439 at 2824.391 kb on - strand, within SMc02439 at 2824.408 kb on + strand, within SMc02439 at 2824.462 kb on + strand, within SMc02439 at 2824.462 kb on + strand, within SMc02439 at 2824.462 kb on + strand, within SMc02439 at 2824.463 kb on - strand, within SMc02439
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 2,823,900 - +1.0 2,824,336 + SMc02439 0.19 +0.5 2,824,336 + SMc02439 0.19 +0.8 2,824,336 + SMc02439 0.19 -0.0 2,824,336 + SMc02439 0.19 +0.1 2,824,337 - SMc02439 0.19 -0.0 2,824,337 - SMc02439 0.19 +1.0 2,824,337 - SMc02439 0.19 -0.0 2,824,390 + SMc02439 0.29 +0.3 2,824,390 + SMc02439 0.29 +1.2 2,824,391 - SMc02439 0.29 -0.8 2,824,391 - SMc02439 0.29 +1.5 2,824,391 - SMc02439 0.29 +0.3 2,824,408 + SMc02439 0.32 +0.6 2,824,462 + SMc02439 0.42 +0.5 2,824,462 + SMc02439 0.42 +0.4 2,824,462 + SMc02439 0.42 -0.3 2,824,463 - SMc02439 0.42 -0.7
Or see this region's nucleotide sequence