Strain Fitness in Sinorhizobium meliloti 1021 around SMc02258

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02256 and SMc02257 overlap by 11 nucleotidesSMc02257 and SMc02258 overlap by 4 nucleotidesSMc02258 and SMc02259 are separated by 107 nucleotidesSMc02259 and SMc02260 are separated by 36 nucleotides SMc02256: SMc02256 - hippurate hydrolase, at 621,308 to 622,489 SMc02256 SMc02257: SMc02257 - ABC transporter permease, at 622,479 to 623,303 SMc02257 SMc02258: SMc02258 - ABC transporter permease, at 623,300 to 624,025 SMc02258 SMc02259: SMc02259 - periplasmic binding ABC transporter protein, at 624,133 to 624,915 SMc02259 SMc02260: SMc02260 - ABC transporter ATP-binding protein, at 624,952 to 625,806 SMc02260 Position (kb) 623 624 625Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 622.552 kb on + strandat 622.552 kb on + strandat 622.553 kb on - strandat 622.553 kb on - strandat 622.553 kb on - strandat 622.553 kb on - strandat 622.582 kb on + strand, within SMc02257at 622.583 kb on - strand, within SMc02257at 622.591 kb on + strand, within SMc02257at 622.591 kb on + strand, within SMc02257at 622.624 kb on + strand, within SMc02257at 622.625 kb on - strand, within SMc02257at 622.625 kb on - strand, within SMc02257at 622.835 kb on - strand, within SMc02257at 622.892 kb on - strand, within SMc02257at 622.952 kb on - strand, within SMc02257at 622.965 kb on + strand, within SMc02257at 622.966 kb on - strand, within SMc02257at 622.966 kb on - strand, within SMc02257at 622.966 kb on - strand, within SMc02257at 623.001 kb on - strand, within SMc02257at 623.001 kb on - strand, within SMc02257at 623.272 kb on + strandat 623.272 kb on + strandat 623.273 kb on - strandat 623.273 kb on - strandat 623.382 kb on + strand, within SMc02258at 623.382 kb on + strand, within SMc02258at 623.382 kb on + strand, within SMc02258at 623.383 kb on - strand, within SMc02258at 623.415 kb on + strand, within SMc02258at 623.416 kb on - strand, within SMc02258at 623.539 kb on - strand, within SMc02258at 623.539 kb on - strand, within SMc02258at 623.595 kb on + strand, within SMc02258at 623.717 kb on - strand, within SMc02258at 623.775 kb on + strand, within SMc02258at 623.776 kb on - strand, within SMc02258at 623.778 kb on + strand, within SMc02258at 623.778 kb on + strand, within SMc02258at 623.779 kb on - strand, within SMc02258at 623.779 kb on - strand, within SMc02258at 623.779 kb on - strand, within SMc02258at 623.779 kb on - strand, within SMc02258at 623.830 kb on - strand, within SMc02258at 623.865 kb on + strand, within SMc02258at 623.866 kb on - strand, within SMc02258at 623.866 kb on - strand, within SMc02258at 623.866 kb on - strand, within SMc02258at 623.914 kb on - strand, within SMc02258at 624.037 kb on - strandat 624.143 kb on + strandat 624.161 kb on + strandat 624.161 kb on + strandat 624.186 kb on + strandat 624.311 kb on + strand, within SMc02259at 624.431 kb on + strand, within SMc02259at 624.432 kb on - strand, within SMc02259at 624.432 kb on - strand, within SMc02259at 624.477 kb on - strand, within SMc02259at 624.477 kb on - strand, within SMc02259at 624.477 kb on - strand, within SMc02259at 624.588 kb on - strand, within SMc02259at 624.588 kb on - strand, within SMc02259at 624.590 kb on + strand, within SMc02259

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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622,552 + -0.4
622,552 + +0.6
622,553 - +1.1
622,553 - +0.9
622,553 - -2.2
622,553 - +0.4
622,582 + SMc02257 0.12 +0.0
622,583 - SMc02257 0.13 -0.8
622,591 + SMc02257 0.14 -0.5
622,591 + SMc02257 0.14 +0.1
622,624 + SMc02257 0.18 +0.8
622,625 - SMc02257 0.18 +0.3
622,625 - SMc02257 0.18 +0.0
622,835 - SMc02257 0.43 -1.5
622,892 - SMc02257 0.50 -0.7
622,952 - SMc02257 0.57 -2.0
622,965 + SMc02257 0.59 +0.1
622,966 - SMc02257 0.59 +2.8
622,966 - SMc02257 0.59 +0.8
622,966 - SMc02257 0.59 -0.2
623,001 - SMc02257 0.63 -0.2
623,001 - SMc02257 0.63 -0.7
623,272 + -0.3
623,272 + +1.3
623,273 - +1.1
623,273 - -0.2
623,382 + SMc02258 0.11 +0.5
623,382 + SMc02258 0.11 -0.1
623,382 + SMc02258 0.11 +0.5
623,383 - SMc02258 0.11 +1.0
623,415 + SMc02258 0.16 +0.5
623,416 - SMc02258 0.16 +0.9
623,539 - SMc02258 0.33 +0.4
623,539 - SMc02258 0.33 -0.8
623,595 + SMc02258 0.41 -1.9
623,717 - SMc02258 0.57 -0.4
623,775 + SMc02258 0.65 -1.1
623,776 - SMc02258 0.66 +4.1
623,778 + SMc02258 0.66 +0.9
623,778 + SMc02258 0.66 +0.7
623,779 - SMc02258 0.66 -0.3
623,779 - SMc02258 0.66 +0.5
623,779 - SMc02258 0.66 -0.0
623,779 - SMc02258 0.66 -0.1
623,830 - SMc02258 0.73 +0.8
623,865 + SMc02258 0.78 +0.4
623,866 - SMc02258 0.78 -0.3
623,866 - SMc02258 0.78 +0.4
623,866 - SMc02258 0.78 +1.3
623,914 - SMc02258 0.85 -0.7
624,037 - -0.6
624,143 + +1.6
624,161 + -0.8
624,161 + +1.1
624,186 + -0.7
624,311 + SMc02259 0.23 -0.8
624,431 + SMc02259 0.38 +0.0
624,432 - SMc02259 0.38 -1.6
624,432 - SMc02259 0.38 -1.1
624,477 - SMc02259 0.44 +1.4
624,477 - SMc02259 0.44 +0.1
624,477 - SMc02259 0.44 +0.0
624,588 - SMc02259 0.58 -0.3
624,588 - SMc02259 0.58 +0.2
624,590 + SMc02259 0.58 +0.1

Or see this region's nucleotide sequence