Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01983 and SMc01984 overlap by 4 nucleotides SMc01984 and SMc01985 are separated by 12 nucleotides SMc01985 and SMc01986 are separated by 11 nucleotides SMc01986 and SMc01987 are separated by 260 nucleotides
SMc01983: SMc01983 - alternative cytochrome C oxidase polypeptide I transmembrane protein, at 2,707,384 to 2,709,165
SMc01983
SMc01984: SMc01984 - cytochrome-C oxidase transmembrane protein, at 2,709,162 to 2,709,860
SMc01984
SMc01985: SMc01985 - cytochrome-c oxidase, at 2,709,873 to 2,710,595
SMc01985
SMc01986: SMc01986 - hypothetical protein, at 2,710,607 to 2,710,966
SMc01986
SMc01987: SMc01987 - dehydrogenase, at 2,711,227 to 2,713,788
SMc01987
Position (kb)
2709
2710
2711 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2709.076 kb on + strand at 2709.077 kb on - strand at 2709.082 kb on + strand at 2709.082 kb on + strand at 2709.082 kb on + strand at 2709.082 kb on + strand at 2709.082 kb on + strand at 2709.083 kb on - strand at 2709.366 kb on + strand, within SMc01984 at 2709.366 kb on + strand, within SMc01984 at 2709.431 kb on + strand, within SMc01984 at 2709.633 kb on + strand, within SMc01984 at 2709.641 kb on + strand, within SMc01984 at 2709.858 kb on + strand at 2709.858 kb on + strand at 2709.858 kb on + strand at 2709.859 kb on - strand at 2709.859 kb on - strand at 2709.859 kb on - strand at 2709.859 kb on - strand at 2710.053 kb on + strand, within SMc01985 at 2710.053 kb on + strand, within SMc01985 at 2710.053 kb on + strand, within SMc01985 at 2710.053 kb on + strand, within SMc01985 at 2710.054 kb on - strand, within SMc01985 at 2710.209 kb on + strand, within SMc01985 at 2710.209 kb on + strand, within SMc01985 at 2710.210 kb on - strand, within SMc01985 at 2710.370 kb on + strand, within SMc01985 at 2710.371 kb on - strand, within SMc01985 at 2710.371 kb on - strand, within SMc01985 at 2710.371 kb on - strand, within SMc01985 at 2710.536 kb on + strand at 2710.537 kb on - strand at 2710.569 kb on - strand at 2710.585 kb on - strand at 2710.682 kb on + strand, within SMc01986 at 2710.683 kb on - strand, within SMc01986 at 2710.727 kb on + strand, within SMc01986 at 2710.727 kb on + strand, within SMc01986 at 2710.812 kb on + strand, within SMc01986 at 2710.828 kb on + strand, within SMc01986 at 2710.828 kb on + strand, within SMc01986 at 2710.829 kb on - strand, within SMc01986 at 2710.922 kb on + strand, within SMc01986 at 2710.922 kb on + strand, within SMc01986 at 2710.922 kb on + strand, within SMc01986 at 2710.922 kb on + strand, within SMc01986 at 2710.922 kb on + strand, within SMc01986 at 2710.922 kb on + strand, within SMc01986 at 2710.922 kb on + strand, within SMc01986 at 2710.922 kb on + strand, within SMc01986 at 2710.922 kb on + strand, within SMc01986 at 2710.922 kb on + strand, within SMc01986 at 2710.922 kb on + strand, within SMc01986 at 2710.923 kb on - strand, within SMc01986 at 2710.923 kb on - strand, within SMc01986 at 2710.923 kb on - strand, within SMc01986 at 2710.923 kb on - strand, within SMc01986 at 2710.923 kb on - strand, within SMc01986 at 2711.060 kb on - strand at 2711.152 kb on + strand at 2711.153 kb on - strand at 2711.159 kb on + strand at 2711.192 kb on - strand at 2711.210 kb on + strand at 2711.211 kb on - strand at 2711.258 kb on + strand at 2711.374 kb on - strand at 2711.399 kb on - strand at 2711.399 kb on - strand at 2711.417 kb on - strand at 2711.417 kb on - strand at 2711.440 kb on + strand at 2711.441 kb on - strand at 2711.441 kb on - strand at 2711.473 kb on + strand at 2711.473 kb on + strand at 2711.474 kb on - strand at 2711.474 kb on - strand at 2711.581 kb on + strand, within SMc01987 at 2711.582 kb on - strand, within SMc01987 at 2711.582 kb on - strand, within SMc01987 at 2711.582 kb on - strand, within SMc01987 at 2711.582 kb on - strand, within SMc01987
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 2,709,076 + -0.6 2,709,077 - -0.0 2,709,082 + +1.3 2,709,082 + +0.3 2,709,082 + -0.3 2,709,082 + +0.6 2,709,082 + -0.9 2,709,083 - +0.6 2,709,366 + SMc01984 0.29 -0.2 2,709,366 + SMc01984 0.29 -0.9 2,709,431 + SMc01984 0.38 -0.5 2,709,633 + SMc01984 0.67 +0.2 2,709,641 + SMc01984 0.69 +0.1 2,709,858 + +0.3 2,709,858 + +0.2 2,709,858 + -0.4 2,709,859 - +1.1 2,709,859 - +0.6 2,709,859 - +0.1 2,709,859 - +0.4 2,710,053 + SMc01985 0.25 +0.8 2,710,053 + SMc01985 0.25 -0.8 2,710,053 + SMc01985 0.25 -1.7 2,710,053 + SMc01985 0.25 +2.5 2,710,054 - SMc01985 0.25 +0.4 2,710,209 + SMc01985 0.46 +0.5 2,710,209 + SMc01985 0.46 +0.3 2,710,210 - SMc01985 0.47 +1.7 2,710,370 + SMc01985 0.69 +0.4 2,710,371 - SMc01985 0.69 -1.5 2,710,371 - SMc01985 0.69 -0.5 2,710,371 - SMc01985 0.69 +0.4 2,710,536 + +0.7 2,710,537 - +0.0 2,710,569 - -0.3 2,710,585 - -0.8 2,710,682 + SMc01986 0.21 +0.1 2,710,683 - SMc01986 0.21 -0.1 2,710,727 + SMc01986 0.33 +0.2 2,710,727 + SMc01986 0.33 +0.2 2,710,812 + SMc01986 0.57 -0.2 2,710,828 + SMc01986 0.61 -2.2 2,710,828 + SMc01986 0.61 -3.0 2,710,829 - SMc01986 0.62 -1.2 2,710,922 + SMc01986 0.88 +0.2 2,710,922 + SMc01986 0.88 -0.2 2,710,922 + SMc01986 0.88 -0.6 2,710,922 + SMc01986 0.88 -0.3 2,710,922 + SMc01986 0.88 -0.4 2,710,922 + SMc01986 0.88 +0.1 2,710,922 + SMc01986 0.88 +0.5 2,710,922 + SMc01986 0.88 -0.1 2,710,922 + SMc01986 0.88 -0.4 2,710,922 + SMc01986 0.88 -0.5 2,710,922 + SMc01986 0.88 +0.7 2,710,923 - SMc01986 0.88 -1.8 2,710,923 - SMc01986 0.88 -1.3 2,710,923 - SMc01986 0.88 -0.9 2,710,923 - SMc01986 0.88 +0.5 2,710,923 - SMc01986 0.88 -0.6 2,711,060 - -0.6 2,711,152 + -0.1 2,711,153 - -0.0 2,711,159 + -0.0 2,711,192 - -1.2 2,711,210 + -0.2 2,711,211 - -1.0 2,711,258 + -1.2 2,711,374 - +0.8 2,711,399 - +1.7 2,711,399 - +0.1 2,711,417 - +1.7 2,711,417 - +0.6 2,711,440 + +0.8 2,711,441 - +0.8 2,711,441 - +1.0 2,711,473 + -1.7 2,711,473 + +0.4 2,711,474 - +0.2 2,711,474 - -1.6 2,711,581 + SMc01987 0.14 +2.1 2,711,582 - SMc01987 0.14 +0.7 2,711,582 - SMc01987 0.14 +0.4 2,711,582 - SMc01987 0.14 +1.0 2,711,582 - SMc01987 0.14 -0.3
Or see this region's nucleotide sequence