Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01755 and SMc01756 are separated by 304 nucleotides SMc01756 and SMc01757 are separated by 176 nucleotides SMc01757 and SMc01758 are separated by 343 nucleotides
SMc01755: SMc01755 - transport transmembrane protein, at 1,299,607 to 1,300,842
SMc01755
SMc01756: SMc01756 - aspartyl-tRNA synthetase, at 1,301,147 to 1,302,934
SMc01756
SMc01757: SMc01757 - hypothetical protein, at 1,303,111 to 1,303,491
SMc01757
SMc01758: SMc01758 - chaperonin GroEL, at 1,303,835 to 1,305,463
SMc01758
Position (kb)
1301
1302
1303 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1300.175 kb on + strand, within SMc01755 at 1300.175 kb on + strand, within SMc01755 at 1300.175 kb on + strand, within SMc01755 at 1300.176 kb on - strand, within SMc01755 at 1300.176 kb on - strand, within SMc01755 at 1300.179 kb on + strand, within SMc01755 at 1300.179 kb on + strand, within SMc01755 at 1300.180 kb on - strand, within SMc01755 at 1300.180 kb on - strand, within SMc01755 at 1300.279 kb on + strand, within SMc01755 at 1300.442 kb on + strand, within SMc01755 at 1300.667 kb on + strand, within SMc01755 at 1300.667 kb on + strand, within SMc01755 at 1300.668 kb on - strand, within SMc01755 at 1300.668 kb on - strand, within SMc01755 at 1300.882 kb on + strand at 1300.904 kb on - strand at 1300.904 kb on - strand at 1300.904 kb on - strand at 1300.930 kb on - strand at 1301.125 kb on + strand at 1303.038 kb on - strand at 1303.271 kb on + strand, within SMc01757 at 1303.321 kb on + strand, within SMc01757 at 1303.421 kb on - strand, within SMc01757 at 1303.677 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 1,300,175 + SMc01755 0.46 -1.5 1,300,175 + SMc01755 0.46 +0.2 1,300,175 + SMc01755 0.46 +0.1 1,300,176 - SMc01755 0.46 -0.2 1,300,176 - SMc01755 0.46 +2.2 1,300,179 + SMc01755 0.46 -0.3 1,300,179 + SMc01755 0.46 +1.8 1,300,180 - SMc01755 0.46 +0.7 1,300,180 - SMc01755 0.46 +0.2 1,300,279 + SMc01755 0.54 +1.5 1,300,442 + SMc01755 0.68 -1.5 1,300,667 + SMc01755 0.86 -0.7 1,300,667 + SMc01755 0.86 -0.0 1,300,668 - SMc01755 0.86 -0.1 1,300,668 - SMc01755 0.86 +2.8 1,300,882 + -1.2 1,300,904 - +0.1 1,300,904 - -2.3 1,300,904 - +0.8 1,300,930 - -0.0 1,301,125 + +0.0 1,303,038 - +0.0 1,303,271 + SMc01757 0.42 +1.6 1,303,321 + SMc01757 0.55 +0.0 1,303,421 - SMc01757 0.81 +0.3 1,303,677 - -0.3
Or see this region's nucleotide sequence