Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01363 and SMc01362 overlap by 1 nucleotides SMc01362 and SMc01361 are separated by 29 nucleotides SMc01361 and SMc01360 overlap by 4 nucleotides
SMc01363: SMc01363 - hypothetical protein, at 1,419,891 to 1,421,042
SMc01363
SMc01362: SMc01362 - glycerol-3-phosphate acyltransferase PlsY, at 1,421,042 to 1,421,653
SMc01362
SMc01361: SMc01361 - dihydroorotase, at 1,421,683 to 1,422,975
SMc01361
SMc01360: SMc01360 - aspartate carbamoyltransferase catalytic subunit, at 1,422,972 to 1,423,913
SMc01360
Position (kb)
1421
1422
1423 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1421.715 kb on - strand at 1421.715 kb on - strand at 1421.923 kb on + strand, within SMc01361 at 1421.924 kb on - strand, within SMc01361 at 1421.939 kb on + strand, within SMc01361 at 1422.055 kb on - strand, within SMc01361 at 1422.272 kb on + strand, within SMc01361 at 1422.272 kb on + strand, within SMc01361 at 1422.453 kb on - strand, within SMc01361 at 1422.842 kb on - strand, within SMc01361 at 1422.842 kb on - strand, within SMc01361 at 1422.879 kb on + strand at 1423.181 kb on - strand, within SMc01360 at 1423.181 kb on - strand, within SMc01360 at 1423.184 kb on - strand, within SMc01360 at 1423.184 kb on - strand, within SMc01360 at 1423.184 kb on - strand, within SMc01360 at 1423.193 kb on - strand, within SMc01360
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 1,421,715 - -3.0 1,421,715 - -4.2 1,421,923 + SMc01361 0.19 -2.3 1,421,924 - SMc01361 0.19 -3.7 1,421,939 + SMc01361 0.20 -2.9 1,422,055 - SMc01361 0.29 -3.6 1,422,272 + SMc01361 0.46 -3.0 1,422,272 + SMc01361 0.46 -2.6 1,422,453 - SMc01361 0.60 -3.9 1,422,842 - SMc01361 0.90 -2.0 1,422,842 - SMc01361 0.90 -2.3 1,422,879 + -5.6 1,423,181 - SMc01360 0.22 -2.3 1,423,181 - SMc01360 0.22 -4.9 1,423,184 - SMc01360 0.23 -2.3 1,423,184 - SMc01360 0.23 -1.8 1,423,184 - SMc01360 0.23 -0.8 1,423,193 - SMc01360 0.23 -2.3
Or see this region's nucleotide sequence