Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01217 and SMc01216 are separated by 3 nucleotides SMc01216 and SMc01215 are separated by 128 nucleotides
SMc01217: SMc01217 - transport transmembrane protein, at 1,706,955 to 1,708,424
SMc01217
SMc01216: SMc01216 - hypothetical protein, at 1,708,428 to 1,708,730
SMc01216
SMc01215: SMc01215 - carbamoyl phosphate synthase large subunit, at 1,708,859 to 1,712,350
SMc01215
Position (kb)
1708
1709 Strain fitness (log2 ratio)
-2
-1
0
1 at 1707.454 kb on + strand, within SMc01217 at 1707.507 kb on + strand, within SMc01217 at 1707.507 kb on + strand, within SMc01217 at 1707.507 kb on + strand, within SMc01217 at 1707.508 kb on - strand, within SMc01217 at 1707.542 kb on - strand, within SMc01217 at 1707.658 kb on + strand, within SMc01217 at 1707.658 kb on + strand, within SMc01217 at 1707.659 kb on - strand, within SMc01217 at 1707.659 kb on - strand, within SMc01217 at 1707.681 kb on - strand, within SMc01217 at 1707.873 kb on + strand, within SMc01217 at 1707.873 kb on + strand, within SMc01217 at 1707.874 kb on - strand, within SMc01217 at 1707.874 kb on - strand, within SMc01217 at 1707.874 kb on - strand, within SMc01217 at 1707.882 kb on + strand, within SMc01217 at 1707.950 kb on - strand, within SMc01217 at 1708.084 kb on - strand, within SMc01217 at 1708.230 kb on + strand, within SMc01217 at 1708.637 kb on - strand, within SMc01216 at 1708.639 kb on + strand, within SMc01216 at 1708.640 kb on - strand, within SMc01216 at 1708.721 kb on - strand at 1708.723 kb on - strand at 1709.368 kb on + strand, within SMc01215
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 1,707,454 + SMc01217 0.34 -0.4 1,707,507 + SMc01217 0.38 +0.5 1,707,507 + SMc01217 0.38 -0.7 1,707,507 + SMc01217 0.38 +0.9 1,707,508 - SMc01217 0.38 +1.4 1,707,542 - SMc01217 0.40 +1.3 1,707,658 + SMc01217 0.48 -0.3 1,707,658 + SMc01217 0.48 -0.2 1,707,659 - SMc01217 0.48 +0.1 1,707,659 - SMc01217 0.48 -1.1 1,707,681 - SMc01217 0.49 +0.6 1,707,873 + SMc01217 0.62 -0.6 1,707,873 + SMc01217 0.62 -0.1 1,707,874 - SMc01217 0.63 -0.3 1,707,874 - SMc01217 0.63 +0.3 1,707,874 - SMc01217 0.63 +0.4 1,707,882 + SMc01217 0.63 +0.3 1,707,950 - SMc01217 0.68 +0.5 1,708,084 - SMc01217 0.77 +0.7 1,708,230 + SMc01217 0.87 +0.4 1,708,637 - SMc01216 0.69 +1.5 1,708,639 + SMc01216 0.70 -0.3 1,708,640 - SMc01216 0.70 +0.2 1,708,721 - -0.0 1,708,723 - +0.0 1,709,368 + SMc01215 0.15 -2.1
Or see this region's nucleotide sequence