Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01103 and SMc01102 are separated by 105 nucleotides SMc01102 and SMc01101 are separated by 137 nucleotides SMc01101 and SMc01100 are separated by 69 nucleotides
SMc01103: SMc01103 - Ribokinase (EC 2.7.1.15) <small>(from data)</small>, at 453,189 to 454,088
SMc01103
SMc01102: SMc01102 - hypothetical protein, at 454,194 to 455,399
SMc01102
SMc01101: SMc01101 - peptide deformylase, at 455,537 to 456,073
SMc01101
SMc01100: SMc01100 - methionyl-tRNA formyltransferase, at 456,143 to 457,078
SMc01100
Position (kb) 454
455
456 Strain fitness (log2 ratio) -1
0
1
2
3 at 453.328 kb on + strand, within SMc01103 at 453.341 kb on + strand, within SMc01103 at 453.341 kb on + strand, within SMc01103 at 453.341 kb on + strand, within SMc01103 at 453.342 kb on - strand, within SMc01103 at 453.360 kb on - strand, within SMc01103 at 453.441 kb on + strand, within SMc01103 at 454.410 kb on + strand, within SMc01102 at 454.411 kb on - strand, within SMc01102 at 454.635 kb on + strand, within SMc01102 at 454.675 kb on + strand, within SMc01102 at 454.676 kb on - strand, within SMc01102 at 454.697 kb on + strand, within SMc01102 at 454.841 kb on + strand, within SMc01102 at 454.841 kb on + strand, within SMc01102 at 454.842 kb on - strand, within SMc01102
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 453,328 + SMc01103 0.15 +0.1 453,341 + SMc01103 0.17 +1.6 453,341 + SMc01103 0.17 -0.0 453,341 + SMc01103 0.17 +0.8 453,342 - SMc01103 0.17 -1.4 453,360 - SMc01103 0.19 +0.9 453,441 + SMc01103 0.28 +0.6 454,410 + SMc01102 0.18 +0.2 454,411 - SMc01102 0.18 +0.7 454,635 + SMc01102 0.37 -0.5 454,675 + SMc01102 0.40 +0.6 454,676 - SMc01102 0.40 +0.9 454,697 + SMc01102 0.42 +3.1 454,841 + SMc01102 0.54 -0.1 454,841 + SMc01102 0.54 -0.2 454,842 - SMc01102 0.54 +1.2
Or see this region's nucleotide sequence