Strain Fitness in Sinorhizobium meliloti 1021 around SMc00986

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00987 and SMc00986 are separated by 374 nucleotidesSMc00986 and SMc00985 are separated by 47 nucleotides SMc00987: SMc00987 - hypothetical protein, at 948,018 to 948,584 SMc00987 SMc00986: SMc00986 - hypothetical protein, at 948,959 to 951,268 SMc00986 SMc00985: SMc00985 - oxidoreductase, at 951,316 to 952,758 SMc00985 Position (kb) 948 949 950 951 952Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 947.991 kb on + strandat 947.991 kb on + strandat 947.991 kb on + strandat 947.991 kb on + strandat 947.991 kb on + strandat 947.991 kb on + strandat 947.991 kb on + strandat 947.992 kb on - strandat 947.992 kb on - strandat 947.998 kb on + strandat 947.999 kb on - strandat 947.999 kb on - strandat 948.167 kb on + strand, within SMc00987at 948.294 kb on - strand, within SMc00987at 948.294 kb on - strand, within SMc00987at 948.406 kb on + strand, within SMc00987at 948.503 kb on - strand, within SMc00987at 948.575 kb on + strandat 948.575 kb on + strandat 948.576 kb on - strandat 948.589 kb on + strandat 948.663 kb on + strandat 948.971 kb on + strandat 948.972 kb on - strandat 949.051 kb on + strandat 949.051 kb on + strandat 949.052 kb on - strandat 949.058 kb on + strandat 949.059 kb on - strandat 949.059 kb on - strandat 949.059 kb on - strandat 949.061 kb on + strandat 949.112 kb on + strandat 949.142 kb on + strandat 949.142 kb on + strandat 949.334 kb on + strand, within SMc00986at 949.334 kb on + strand, within SMc00986at 949.334 kb on + strand, within SMc00986at 949.335 kb on - strand, within SMc00986at 949.335 kb on - strand, within SMc00986at 949.335 kb on - strand, within SMc00986at 949.337 kb on - strand, within SMc00986at 949.337 kb on - strandat 949.339 kb on + strand, within SMc00986at 949.339 kb on + strand, within SMc00986at 949.340 kb on - strand, within SMc00986at 949.340 kb on - strand, within SMc00986at 949.340 kb on - strand, within SMc00986at 949.388 kb on + strand, within SMc00986at 949.388 kb on + strand, within SMc00986at 949.388 kb on + strand, within SMc00986at 949.389 kb on - strand, within SMc00986at 949.389 kb on - strand, within SMc00986at 949.389 kb on - strand, within SMc00986at 949.389 kb on - strand, within SMc00986at 949.454 kb on + strand, within SMc00986at 949.454 kb on + strand, within SMc00986at 949.454 kb on + strand, within SMc00986at 949.455 kb on - strand, within SMc00986at 949.455 kb on - strand, within SMc00986at 949.455 kb on - strand, within SMc00986at 949.490 kb on + strand, within SMc00986at 949.490 kb on + strand, within SMc00986at 949.490 kb on + strand, within SMc00986at 949.491 kb on - strand, within SMc00986at 949.547 kb on + strand, within SMc00986at 949.547 kb on + strand, within SMc00986at 949.547 kb on + strand, within SMc00986at 949.548 kb on - strand, within SMc00986at 949.548 kb on - strand, within SMc00986at 949.548 kb on - strand, within SMc00986at 949.576 kb on - strand, within SMc00986at 949.669 kb on - strand, within SMc00986at 949.676 kb on + strand, within SMc00986at 949.676 kb on + strand, within SMc00986at 949.677 kb on - strand, within SMc00986at 949.677 kb on - strand, within SMc00986at 949.706 kb on + strand, within SMc00986at 949.707 kb on - strand, within SMc00986at 949.805 kb on + strand, within SMc00986at 949.805 kb on + strand, within SMc00986at 949.805 kb on + strand, within SMc00986at 949.806 kb on - strand, within SMc00986at 949.806 kb on - strand, within SMc00986at 949.923 kb on - strand, within SMc00986at 949.923 kb on - strand, within SMc00986at 949.923 kb on - strand, within SMc00986at 949.923 kb on - strand, within SMc00986at 949.924 kb on + strand, within SMc00986at 949.924 kb on + strand, within SMc00986at 949.924 kb on + strand, within SMc00986at 949.925 kb on - strand, within SMc00986at 949.929 kb on - strand, within SMc00986at 949.929 kb on - strand, within SMc00986at 949.929 kb on - strand, within SMc00986at 949.929 kb on - strand, within SMc00986at 949.987 kb on + strand, within SMc00986at 950.021 kb on + strand, within SMc00986at 950.021 kb on + strand, within SMc00986at 950.022 kb on - strand, within SMc00986at 950.022 kb on - strand, within SMc00986at 950.022 kb on - strand, within SMc00986at 950.022 kb on - strand, within SMc00986at 950.054 kb on + strand, within SMc00986at 950.054 kb on + strand, within SMc00986at 950.054 kb on + strand, within SMc00986at 950.055 kb on - strand, within SMc00986at 950.055 kb on - strand, within SMc00986at 950.156 kb on + strand, within SMc00986at 950.156 kb on + strand, within SMc00986at 950.168 kb on + strand, within SMc00986at 950.168 kb on + strand, within SMc00986at 950.168 kb on + strand, within SMc00986at 950.214 kb on - strand, within SMc00986at 950.216 kb on - strand, within SMc00986at 950.216 kb on - strand, within SMc00986at 950.378 kb on + strand, within SMc00986at 950.378 kb on + strand, within SMc00986at 950.379 kb on - strand, within SMc00986at 950.379 kb on - strand, within SMc00986at 950.379 kb on - strand, within SMc00986at 950.380 kb on + strand, within SMc00986at 950.381 kb on - strand, within SMc00986at 950.381 kb on - strand, within SMc00986at 950.381 kb on - strand, within SMc00986at 950.399 kb on + strand, within SMc00986at 950.400 kb on - strand, within SMc00986at 950.501 kb on + strand, within SMc00986at 950.501 kb on + strand, within SMc00986at 950.501 kb on + strand, within SMc00986at 950.501 kb on + strand, within SMc00986at 950.502 kb on - strand, within SMc00986at 950.567 kb on + strand, within SMc00986at 950.567 kb on + strand, within SMc00986at 950.570 kb on + strand, within SMc00986at 950.570 kb on + strand, within SMc00986at 950.572 kb on + strand, within SMc00986at 950.573 kb on - strand, within SMc00986at 950.760 kb on - strand, within SMc00986at 950.760 kb on - strand, within SMc00986at 950.760 kb on - strand, within SMc00986at 950.760 kb on - strand, within SMc00986at 950.867 kb on + strand, within SMc00986at 950.967 kb on - strand, within SMc00986at 951.146 kb on + strandat 951.318 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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947,991 + -1.6
947,991 + -0.5
947,991 + +0.1
947,991 + -0.3
947,991 + -0.5
947,991 + +0.4
947,991 + -0.7
947,992 - +1.8
947,992 - -0.7
947,998 + -1.9
947,999 - -3.0
947,999 - +2.2
948,167 + SMc00987 0.26 +0.8
948,294 - SMc00987 0.49 +0.3
948,294 - SMc00987 0.49 -1.2
948,406 + SMc00987 0.68 -0.7
948,503 - SMc00987 0.86 +0.5
948,575 + -1.4
948,575 + -0.8
948,576 - +1.1
948,589 + -0.9
948,663 + -1.9
948,971 + -0.9
948,972 - +1.8
949,051 + +0.3
949,051 + +0.5
949,052 - +0.7
949,058 + -0.8
949,059 - +1.1
949,059 - -1.4
949,059 - +0.5
949,061 + -1.4
949,112 + +0.7
949,142 + +0.5
949,142 + -0.8
949,334 + SMc00986 0.16 +0.7
949,334 + SMc00986 0.16 +0.7
949,334 + SMc00986 0.16 +0.2
949,335 - SMc00986 0.16 +0.3
949,335 - SMc00986 0.16 -0.7
949,335 - SMc00986 0.16 +1.4
949,337 - SMc00986 0.16 +0.4
949,337 - -1.0
949,339 + SMc00986 0.16 -1.0
949,339 + SMc00986 0.16 -1.4
949,340 - SMc00986 0.16 +0.0
949,340 - SMc00986 0.16 +2.3
949,340 - SMc00986 0.16 +1.5
949,388 + SMc00986 0.19 +0.6
949,388 + SMc00986 0.19 +2.1
949,388 + SMc00986 0.19 -0.8
949,389 - SMc00986 0.19 +1.5
949,389 - SMc00986 0.19 +0.6
949,389 - SMc00986 0.19 +0.1
949,389 - SMc00986 0.19 -0.3
949,454 + SMc00986 0.21 +0.7
949,454 + SMc00986 0.21 -0.8
949,454 + SMc00986 0.21 -1.5
949,455 - SMc00986 0.21 -1.1
949,455 - SMc00986 0.21 +1.2
949,455 - SMc00986 0.21 -0.8
949,490 + SMc00986 0.23 -1.3
949,490 + SMc00986 0.23 -0.2
949,490 + SMc00986 0.23 +3.8
949,491 - SMc00986 0.23 -0.1
949,547 + SMc00986 0.25 +1.7
949,547 + SMc00986 0.25 +0.8
949,547 + SMc00986 0.25 -0.6
949,548 - SMc00986 0.25 +0.3
949,548 - SMc00986 0.25 +0.6
949,548 - SMc00986 0.25 -0.5
949,576 - SMc00986 0.27 -0.0
949,669 - SMc00986 0.31 -0.4
949,676 + SMc00986 0.31 +1.4
949,676 + SMc00986 0.31 -0.5
949,677 - SMc00986 0.31 -0.6
949,677 - SMc00986 0.31 -1.3
949,706 + SMc00986 0.32 +0.3
949,707 - SMc00986 0.32 +0.5
949,805 + SMc00986 0.37 -1.5
949,805 + SMc00986 0.37 +1.6
949,805 + SMc00986 0.37 +0.8
949,806 - SMc00986 0.37 +0.8
949,806 - SMc00986 0.37 +0.4
949,923 - SMc00986 0.42 +0.0
949,923 - SMc00986 0.42 -0.6
949,923 - SMc00986 0.42 +0.6
949,923 - SMc00986 0.42 +0.2
949,924 + SMc00986 0.42 -0.1
949,924 + SMc00986 0.42 +0.3
949,924 + SMc00986 0.42 -0.8
949,925 - SMc00986 0.42 +1.8
949,929 - SMc00986 0.42 +0.4
949,929 - SMc00986 0.42 -0.2
949,929 - SMc00986 0.42 +0.1
949,929 - SMc00986 0.42 +1.4
949,987 + SMc00986 0.45 -0.4
950,021 + SMc00986 0.46 +0.6
950,021 + SMc00986 0.46 +0.2
950,022 - SMc00986 0.46 +0.2
950,022 - SMc00986 0.46 +0.4
950,022 - SMc00986 0.46 +1.1
950,022 - SMc00986 0.46 -0.4
950,054 + SMc00986 0.47 -0.5
950,054 + SMc00986 0.47 -1.2
950,054 + SMc00986 0.47 -0.1
950,055 - SMc00986 0.47 +0.4
950,055 - SMc00986 0.47 +0.1
950,156 + SMc00986 0.52 -0.4
950,156 + SMc00986 0.52 +0.3
950,168 + SMc00986 0.52 +0.5
950,168 + SMc00986 0.52 +0.4
950,168 + SMc00986 0.52 -1.9
950,214 - SMc00986 0.54 -0.4
950,216 - SMc00986 0.54 -0.4
950,216 - SMc00986 0.54 +0.4
950,378 + SMc00986 0.61 +2.5
950,378 + SMc00986 0.61 -0.4
950,379 - SMc00986 0.61 -0.0
950,379 - SMc00986 0.61 +0.7
950,379 - SMc00986 0.61 +0.0
950,380 + SMc00986 0.62 +0.5
950,381 - SMc00986 0.62 -0.2
950,381 - SMc00986 0.62 +0.0
950,381 - SMc00986 0.62 -0.1
950,399 + SMc00986 0.62 -0.1
950,400 - SMc00986 0.62 -0.2
950,501 + SMc00986 0.67 -0.9
950,501 + SMc00986 0.67 +0.1
950,501 + SMc00986 0.67 +0.1
950,501 + SMc00986 0.67 +0.3
950,502 - SMc00986 0.67 -0.4
950,567 + SMc00986 0.70 +0.5
950,567 + SMc00986 0.70 +0.2
950,570 + SMc00986 0.70 +0.3
950,570 + SMc00986 0.70 +1.0
950,572 + SMc00986 0.70 +0.3
950,573 - SMc00986 0.70 +1.0
950,760 - SMc00986 0.78 -2.0
950,760 - SMc00986 0.78 -0.7
950,760 - SMc00986 0.78 -0.4
950,760 - SMc00986 0.78 +0.1
950,867 + SMc00986 0.83 +0.3
950,967 - SMc00986 0.87 -0.4
951,146 + -0.7
951,318 - -0.1

Or see this region's nucleotide sequence