Strain Fitness in Sinorhizobium meliloti 1021 around SMc00916

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00918 and SMc00917 overlap by 4 nucleotidesSMc00917 and SMc00916 are separated by 119 nucleotidesSMc00916 and SMc00915 overlap by 226 nucleotidesSMc00915 and SMc00914 are separated by 87 nucleotides SMc00918: SMc00918 - ATP phosphoribosyltransferase regulatory subunit, at 864,669 to 865,808 SMc00918 SMc00917: SMc00917 - ATP phosphoribosyltransferase (EC 2.4.2.17) (from data), at 865,805 to 866,500 SMc00917 SMc00916: SMc00916 - glutathione S-transferase, at 866,620 to 867,363 SMc00916 SMc00915: SMc00915 - hypothetical protein, at 867,138 to 867,329 SMc00915 SMc00914: SMc00914 - oxidoreductase, at 867,417 to 868,634 SMc00914 Position (kb) 866 867 868Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 865.629 kb on + strand, within SMc00918at 865.632 kb on + strand, within SMc00918at 865.632 kb on + strand, within SMc00918at 865.632 kb on + strand, within SMc00918at 865.633 kb on - strand, within SMc00918at 865.633 kb on - strand, within SMc00918at 865.736 kb on + strandat 865.737 kb on - strandat 865.955 kb on + strand, within SMc00917at 865.955 kb on + strand, within SMc00917at 866.129 kb on + strand, within SMc00917at 866.130 kb on - strand, within SMc00917at 866.217 kb on - strand, within SMc00917at 866.217 kb on - strand, within SMc00917at 866.452 kb on + strandat 866.452 kb on + strandat 866.569 kb on + strandat 866.569 kb on + strandat 866.606 kb on + strandat 866.689 kb on + strandat 866.689 kb on + strandat 866.753 kb on - strand, within SMc00916at 866.753 kb on - strand, within SMc00916at 866.905 kb on + strand, within SMc00916at 866.905 kb on + strand, within SMc00916at 866.906 kb on - strand, within SMc00916at 866.906 kb on - strand, within SMc00916at 866.957 kb on - strand, within SMc00916at 867.159 kb on + strandat 867.159 kb on + strandat 867.159 kb on + strandat 867.159 kb on + strandat 867.159 kb on + strandat 867.159 kb on + strandat 867.159 kb on + strandat 867.160 kb on - strandat 867.160 kb on - strandat 867.183 kb on + strandat 867.213 kb on + strandat 867.214 kb on - strandat 867.214 kb on - strandat 867.237 kb on + strandat 867.238 kb on - strandat 867.238 kb on - strandat 867.238 kb on - strandat 867.239 kb on + strandat 867.240 kb on - strandat 867.240 kb on - strandat 867.240 kb on - strandat 867.327 kb on + strandat 867.328 kb on - strandat 867.328 kb on - strandat 867.565 kb on - strand, within SMc00914at 867.689 kb on - strand, within SMc00914at 867.718 kb on - strand, within SMc00914at 867.718 kb on - strand, within SMc00914at 867.880 kb on - strand, within SMc00914at 868.027 kb on + strand, within SMc00914at 868.027 kb on + strand, within SMc00914

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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865,629 + SMc00918 0.84 -6.0
865,632 + SMc00918 0.84 -1.4
865,632 + SMc00918 0.84 -4.8
865,632 + SMc00918 0.84 -2.3
865,633 - SMc00918 0.85 -3.0
865,633 - SMc00918 0.85 -4.9
865,736 + -2.0
865,737 - -5.0
865,955 + SMc00917 0.22 -2.4
865,955 + SMc00917 0.22 -1.9
866,129 + SMc00917 0.47 -4.9
866,130 - SMc00917 0.47 -3.8
866,217 - SMc00917 0.59 -5.0
866,217 - SMc00917 0.59 -3.2
866,452 + -3.9
866,452 + -6.3
866,569 + +0.2
866,569 + -0.5
866,606 + +0.2
866,689 + -0.1
866,689 + +0.8
866,753 - SMc00916 0.18 +0.4
866,753 - SMc00916 0.18 -1.2
866,905 + SMc00916 0.38 +0.8
866,905 + SMc00916 0.38 +0.1
866,906 - SMc00916 0.38 -0.9
866,906 - SMc00916 0.38 +2.1
866,957 - SMc00916 0.45 -0.1
867,159 + -0.3
867,159 + -0.4
867,159 + -0.8
867,159 + -0.6
867,159 + -0.8
867,159 + -2.1
867,159 + -0.3
867,160 - -0.9
867,160 - +1.7
867,183 + +0.0
867,213 + +0.5
867,214 - +0.3
867,214 - +0.0
867,237 + +0.7
867,238 - -0.5
867,238 - -0.7
867,238 - +0.8
867,239 + -1.0
867,240 - +0.3
867,240 - +0.1
867,240 - +0.0
867,327 + -0.7
867,328 - -2.3
867,328 - -0.2
867,565 - SMc00914 0.12 -0.5
867,689 - SMc00914 0.22 -1.5
867,718 - SMc00914 0.25 -1.0
867,718 - SMc00914 0.25 -1.5
867,880 - SMc00914 0.38 -1.6
868,027 + SMc00914 0.50 -0.9
868,027 + SMc00914 0.50 -1.0

Or see this region's nucleotide sequence