Strain Fitness in Sinorhizobium meliloti 1021 around SMc00596

Experiment: L-Serine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc00594 and SMc00595 are separated by 102 nucleotidesSMc00595 and SMc00596 are separated by 52 nucleotidesSMc00596 and SMc00597 overlap by 4 nucleotidesSMc00597 and SMc00598 are separated by 67 nucleotides SMc00594: SMc00594 - beta-etherase (BETA-aryl ether cleaving enzyme) protein, at 1,267,334 to 1,268,023 SMc00594 SMc00595: SMc00595 - nucleoside diphosphate kinase, at 1,268,126 to 1,268,548 SMc00595 SMc00596: SMc00596 - hypothetical protein, at 1,268,601 to 1,269,104 SMc00596 SMc00597: SMc00597 - hypothetical protein, at 1,269,101 to 1,269,661 SMc00597 SMc00598: SMc00598 - branched chain amino acid ABC transporter permease, at 1,269,729 to 1,270,625 SMc00598 Position (kb) 1268 1269 1270Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1267.721 kb on + strand, within SMc00594at 1267.722 kb on - strand, within SMc00594at 1267.883 kb on + strand, within SMc00594at 1267.883 kb on + strand, within SMc00594at 1267.883 kb on + strand, within SMc00594at 1267.883 kb on + strand, within SMc00594at 1267.884 kb on - strand, within SMc00594at 1267.885 kb on + strand, within SMc00594at 1267.885 kb on + strand, within SMc00594at 1267.885 kb on + strand, within SMc00594at 1267.885 kb on + strand, within SMc00594at 1267.886 kb on - strand, within SMc00594at 1267.886 kb on - strand, within SMc00594at 1268.547 kb on - strandat 1268.603 kb on - strandat 1268.797 kb on + strand, within SMc00596at 1268.798 kb on - strand, within SMc00596at 1268.798 kb on - strand, within SMc00596at 1268.798 kb on - strand, within SMc00596at 1268.969 kb on + strand, within SMc00596at 1268.969 kb on + strand, within SMc00596at 1268.969 kb on + strand, within SMc00596at 1268.971 kb on + strand, within SMc00596at 1268.971 kb on + strand, within SMc00596at 1268.971 kb on + strand, within SMc00596at 1268.972 kb on - strand, within SMc00596at 1268.972 kb on - strand, within SMc00596at 1268.972 kb on - strand, within SMc00596at 1268.980 kb on + strand, within SMc00596at 1268.981 kb on - strand, within SMc00596at 1268.992 kb on + strand, within SMc00596at 1268.993 kb on - strand, within SMc00596at 1269.088 kb on - strandat 1269.692 kb on - strandat 1269.781 kb on - strandat 1269.781 kb on - strandat 1269.802 kb on - strandat 1269.843 kb on + strand, within SMc00598at 1269.983 kb on + strand, within SMc00598at 1269.984 kb on - strand, within SMc00598

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
remove
1,267,721 + SMc00594 0.56 -0.9
1,267,722 - SMc00594 0.56 -0.3
1,267,883 + SMc00594 0.80 +0.5
1,267,883 + SMc00594 0.80 -0.2
1,267,883 + SMc00594 0.80 +1.0
1,267,883 + SMc00594 0.80 +0.2
1,267,884 - SMc00594 0.80 +0.5
1,267,885 + SMc00594 0.80 -0.9
1,267,885 + SMc00594 0.80 -0.0
1,267,885 + SMc00594 0.80 -0.1
1,267,885 + SMc00594 0.80 -2.9
1,267,886 - SMc00594 0.80 -0.2
1,267,886 - SMc00594 0.80 +0.2
1,268,547 - -0.8
1,268,603 - -0.2
1,268,797 + SMc00596 0.39 -0.4
1,268,798 - SMc00596 0.39 +0.7
1,268,798 - SMc00596 0.39 -0.4
1,268,798 - SMc00596 0.39 +0.4
1,268,969 + SMc00596 0.73 -0.9
1,268,969 + SMc00596 0.73 +0.0
1,268,969 + SMc00596 0.73 +0.2
1,268,971 + SMc00596 0.73 +0.3
1,268,971 + SMc00596 0.73 +0.2
1,268,971 + SMc00596 0.73 +0.8
1,268,972 - SMc00596 0.74 +1.3
1,268,972 - SMc00596 0.74 +0.5
1,268,972 - SMc00596 0.74 -0.0
1,268,980 + SMc00596 0.75 +0.6
1,268,981 - SMc00596 0.75 +2.8
1,268,992 + SMc00596 0.78 -0.3
1,268,993 - SMc00596 0.78 -0.1
1,269,088 - -0.2
1,269,692 - +1.8
1,269,781 - +0.3
1,269,781 - -1.0
1,269,802 - +1.7
1,269,843 + SMc00598 0.13 -0.5
1,269,983 + SMc00598 0.28 -0.3
1,269,984 - SMc00598 0.28 -0.1

Or see this region's nucleotide sequence