Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00468 and SMc00467 are separated by 168 nucleotides SMc00467 and SMc00466 overlap by 4 nucleotides
SMc00468: SMc00468 - hypothetical protein, at 1,956,916 to 1,957,452
SMc00468
SMc00467: SMc00467 - hypothetical protein, at 1,957,621 to 1,959,120
SMc00467
SMc00466: SMc00466 - hypothetical protein, at 1,959,117 to 1,960,196
SMc00466
Position (kb)
1957
1958
1959
1960 Strain fitness (log2 ratio)
-2
-1
0
1 at 1956.634 kb on - strand at 1956.913 kb on + strand at 1956.913 kb on + strand at 1956.913 kb on + strand at 1956.914 kb on - strand at 1956.914 kb on - strand at 1956.914 kb on - strand at 1956.914 kb on - strand at 1956.914 kb on - strand at 1956.914 kb on - strand at 1957.133 kb on + strand, within SMc00468 at 1957.136 kb on - strand, within SMc00468 at 1957.183 kb on + strand, within SMc00468 at 1957.184 kb on - strand, within SMc00468 at 1957.184 kb on - strand, within SMc00468 at 1957.185 kb on + strand, within SMc00468 at 1957.185 kb on + strand, within SMc00468 at 1957.185 kb on + strand, within SMc00468 at 1957.186 kb on - strand, within SMc00468 at 1957.204 kb on + strand, within SMc00468 at 1957.526 kb on + strand at 1957.526 kb on + strand at 1957.527 kb on - strand at 1957.527 kb on - strand at 1957.531 kb on - strand at 1957.754 kb on + strand at 1957.947 kb on - strand, within SMc00467 at 1957.947 kb on - strand, within SMc00467 at 1957.947 kb on - strand, within SMc00467 at 1958.236 kb on + strand, within SMc00467 at 1958.237 kb on - strand, within SMc00467 at 1958.407 kb on + strand, within SMc00467 at 1958.417 kb on - strand, within SMc00467 at 1958.417 kb on - strand, within SMc00467 at 1958.433 kb on - strand, within SMc00467 at 1959.230 kb on + strand, within SMc00466 at 1959.450 kb on + strand, within SMc00466 at 1959.846 kb on + strand, within SMc00466 at 1959.847 kb on - strand, within SMc00466 at 1959.886 kb on - strand, within SMc00466 at 1959.886 kb on - strand, within SMc00466
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 1,956,634 - +0.8 1,956,913 + -0.0 1,956,913 + -1.4 1,956,913 + +1.3 1,956,914 - +0.6 1,956,914 - -0.4 1,956,914 - +1.0 1,956,914 - +0.4 1,956,914 - +0.1 1,956,914 - +0.3 1,957,133 + SMc00468 0.40 +0.4 1,957,136 - SMc00468 0.41 -0.4 1,957,183 + SMc00468 0.50 +0.5 1,957,184 - SMc00468 0.50 +0.3 1,957,184 - SMc00468 0.50 +0.2 1,957,185 + SMc00468 0.50 -0.4 1,957,185 + SMc00468 0.50 +0.4 1,957,185 + SMc00468 0.50 -0.3 1,957,186 - SMc00468 0.50 -0.3 1,957,204 + SMc00468 0.54 -0.6 1,957,526 + +0.6 1,957,526 + -2.2 1,957,527 - +1.1 1,957,527 - -0.2 1,957,531 - +0.2 1,957,754 + -0.0 1,957,947 - SMc00467 0.22 -1.8 1,957,947 - SMc00467 0.22 -0.5 1,957,947 - SMc00467 0.22 -0.8 1,958,236 + SMc00467 0.41 -2.5 1,958,237 - SMc00467 0.41 -0.4 1,958,407 + SMc00467 0.52 +1.0 1,958,417 - SMc00467 0.53 -0.4 1,958,417 - SMc00467 0.53 -1.4 1,958,433 - SMc00467 0.54 -2.1 1,959,230 + SMc00466 0.10 -1.4 1,959,450 + SMc00466 0.31 -1.9 1,959,846 + SMc00466 0.68 -1.0 1,959,847 - SMc00466 0.68 -1.4 1,959,886 - SMc00466 0.71 +0.4 1,959,886 - SMc00466 0.71 +1.5
Or see this region's nucleotide sequence