Strain Fitness in Sinorhizobium meliloti 1021 around SMc00467

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00468 and SMc00467 are separated by 168 nucleotidesSMc00467 and SMc00466 overlap by 4 nucleotides SMc00468: SMc00468 - hypothetical protein, at 1,956,916 to 1,957,452 SMc00468 SMc00467: SMc00467 - hypothetical protein, at 1,957,621 to 1,959,120 SMc00467 SMc00466: SMc00466 - hypothetical protein, at 1,959,117 to 1,960,196 SMc00466 Position (kb) 1957 1958 1959 1960Strain fitness (log2 ratio) -2 -1 0 1at 1956.634 kb on - strandat 1956.913 kb on + strandat 1956.913 kb on + strandat 1956.913 kb on + strandat 1956.914 kb on - strandat 1956.914 kb on - strandat 1956.914 kb on - strandat 1956.914 kb on - strandat 1956.914 kb on - strandat 1956.914 kb on - strandat 1957.133 kb on + strand, within SMc00468at 1957.136 kb on - strand, within SMc00468at 1957.183 kb on + strand, within SMc00468at 1957.184 kb on - strand, within SMc00468at 1957.184 kb on - strand, within SMc00468at 1957.185 kb on + strand, within SMc00468at 1957.185 kb on + strand, within SMc00468at 1957.185 kb on + strand, within SMc00468at 1957.186 kb on - strand, within SMc00468at 1957.204 kb on + strand, within SMc00468at 1957.526 kb on + strandat 1957.526 kb on + strandat 1957.527 kb on - strandat 1957.527 kb on - strandat 1957.531 kb on - strandat 1957.754 kb on + strandat 1957.947 kb on - strand, within SMc00467at 1957.947 kb on - strand, within SMc00467at 1957.947 kb on - strand, within SMc00467at 1958.236 kb on + strand, within SMc00467at 1958.237 kb on - strand, within SMc00467at 1958.407 kb on + strand, within SMc00467at 1958.417 kb on - strand, within SMc00467at 1958.417 kb on - strand, within SMc00467at 1958.433 kb on - strand, within SMc00467at 1959.230 kb on + strand, within SMc00466at 1959.450 kb on + strand, within SMc00466at 1959.846 kb on + strand, within SMc00466at 1959.847 kb on - strand, within SMc00466at 1959.886 kb on - strand, within SMc00466at 1959.886 kb on - strand, within SMc00466

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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1,956,634 - +0.8
1,956,913 + -0.0
1,956,913 + -1.4
1,956,913 + +1.3
1,956,914 - +0.6
1,956,914 - -0.4
1,956,914 - +1.0
1,956,914 - +0.4
1,956,914 - +0.1
1,956,914 - +0.3
1,957,133 + SMc00468 0.40 +0.4
1,957,136 - SMc00468 0.41 -0.4
1,957,183 + SMc00468 0.50 +0.5
1,957,184 - SMc00468 0.50 +0.3
1,957,184 - SMc00468 0.50 +0.2
1,957,185 + SMc00468 0.50 -0.4
1,957,185 + SMc00468 0.50 +0.4
1,957,185 + SMc00468 0.50 -0.3
1,957,186 - SMc00468 0.50 -0.3
1,957,204 + SMc00468 0.54 -0.6
1,957,526 + +0.6
1,957,526 + -2.2
1,957,527 - +1.1
1,957,527 - -0.2
1,957,531 - +0.2
1,957,754 + -0.0
1,957,947 - SMc00467 0.22 -1.8
1,957,947 - SMc00467 0.22 -0.5
1,957,947 - SMc00467 0.22 -0.8
1,958,236 + SMc00467 0.41 -2.5
1,958,237 - SMc00467 0.41 -0.4
1,958,407 + SMc00467 0.52 +1.0
1,958,417 - SMc00467 0.53 -0.4
1,958,417 - SMc00467 0.53 -1.4
1,958,433 - SMc00467 0.54 -2.1
1,959,230 + SMc00466 0.10 -1.4
1,959,450 + SMc00466 0.31 -1.9
1,959,846 + SMc00466 0.68 -1.0
1,959,847 - SMc00466 0.68 -1.4
1,959,886 - SMc00466 0.71 +0.4
1,959,886 - SMc00466 0.71 +1.5

Or see this region's nucleotide sequence