Strain Fitness in Sinorhizobium meliloti 1021 around SMc00097

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00037 and SMc00097 are separated by 28 nucleotidesSMc00097 and SMc00038 are separated by 265 nucleotides SMc00037: SMc00037 - transcriptional regulator, at 1,051,802 to 1,052,710 SMc00037 SMc00097: SMc00097 - glutathione S-transferase, at 1,052,739 to 1,053,398 SMc00097 SMc00038: SMc00038 - hypothetical protein, at 1,053,664 to 1,055,982 SMc00038 Position (kb) 1052 1053 1054Strain fitness (log2 ratio) -1 0 1 2 3 4at 1051.790 kb on + strandat 1051.954 kb on + strand, within SMc00037at 1051.955 kb on - strand, within SMc00037at 1052.400 kb on + strand, within SMc00037at 1052.400 kb on + strand, within SMc00037at 1052.401 kb on - strand, within SMc00037at 1052.401 kb on - strand, within SMc00037at 1052.401 kb on - strand, within SMc00037at 1052.401 kb on - strand, within SMc00037at 1052.401 kb on - strand, within SMc00037at 1052.401 kb on - strand, within SMc00037at 1052.434 kb on + strand, within SMc00037at 1052.435 kb on - strand, within SMc00037at 1052.597 kb on + strand, within SMc00037at 1052.698 kb on + strandat 1052.860 kb on + strand, within SMc00097at 1052.897 kb on + strand, within SMc00097at 1052.918 kb on - strand, within SMc00097at 1053.036 kb on + strand, within SMc00097at 1053.037 kb on - strand, within SMc00097at 1053.155 kb on - strand, within SMc00097at 1053.352 kb on + strandat 1053.385 kb on + strandat 1053.385 kb on + strandat 1053.385 kb on + strandat 1053.385 kb on + strandat 1053.386 kb on - strandat 1053.386 kb on - strandat 1053.419 kb on - strandat 1053.419 kb on - strandat 1053.432 kb on + strandat 1053.432 kb on + strandat 1053.432 kb on + strandat 1053.433 kb on - strandat 1053.472 kb on + strandat 1053.487 kb on + strandat 1053.487 kb on + strandat 1053.487 kb on + strandat 1053.487 kb on + strandat 1053.488 kb on - strandat 1053.494 kb on + strandat 1053.533 kb on + strandat 1053.534 kb on - strandat 1053.534 kb on - strandat 1053.613 kb on + strandat 1053.613 kb on + strandat 1053.815 kb on - strandat 1053.851 kb on - strandat 1053.851 kb on - strandat 1053.852 kb on + strandat 1053.852 kb on + strandat 1053.852 kb on + strandat 1053.852 kb on + strandat 1053.852 kb on + strandat 1053.852 kb on + strandat 1053.853 kb on - strandat 1053.853 kb on - strandat 1053.853 kb on - strandat 1053.856 kb on + strandat 1053.856 kb on + strandat 1053.856 kb on + strandat 1053.857 kb on - strandat 1053.857 kb on - strandat 1053.857 kb on - strandat 1053.857 kb on - strandat 1053.857 kb on - strandat 1053.857 kb on - strandat 1053.868 kb on - strandat 1053.868 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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1,051,790 + -0.5
1,051,954 + SMc00037 0.17 +0.2
1,051,955 - SMc00037 0.17 +1.2
1,052,400 + SMc00037 0.66 -0.3
1,052,400 + SMc00037 0.66 +0.6
1,052,401 - SMc00037 0.66 -0.8
1,052,401 - SMc00037 0.66 +0.9
1,052,401 - SMc00037 0.66 -0.1
1,052,401 - SMc00037 0.66 +0.6
1,052,401 - SMc00037 0.66 +0.9
1,052,401 - SMc00037 0.66 +1.1
1,052,434 + SMc00037 0.70 +0.8
1,052,435 - SMc00037 0.70 +0.5
1,052,597 + SMc00037 0.87 +0.2
1,052,698 + -0.5
1,052,860 + SMc00097 0.18 -0.3
1,052,897 + SMc00097 0.24 +0.2
1,052,918 - SMc00097 0.27 -1.1
1,053,036 + SMc00097 0.45 +0.1
1,053,037 - SMc00097 0.45 +0.2
1,053,155 - SMc00097 0.63 +0.6
1,053,352 + +0.1
1,053,385 + -1.2
1,053,385 + -0.4
1,053,385 + +0.8
1,053,385 + -1.5
1,053,386 - +2.7
1,053,386 - -0.2
1,053,419 - -0.1
1,053,419 - -0.2
1,053,432 + +3.5
1,053,432 + +1.8
1,053,432 + +0.4
1,053,433 - -0.4
1,053,472 + -0.3
1,053,487 + +1.8
1,053,487 + +0.0
1,053,487 + +0.6
1,053,487 + -0.7
1,053,488 - -1.5
1,053,494 + -0.4
1,053,533 + +0.5
1,053,534 - -0.3
1,053,534 - +0.6
1,053,613 + +0.1
1,053,613 + -1.1
1,053,815 - -0.1
1,053,851 - +0.7
1,053,851 - -0.4
1,053,852 + -0.7
1,053,852 + +1.0
1,053,852 + +2.1
1,053,852 + -0.8
1,053,852 + +0.9
1,053,852 + -0.7
1,053,853 - -0.7
1,053,853 - +0.1
1,053,853 - +0.4
1,053,856 + +0.8
1,053,856 + +1.6
1,053,856 + +0.2
1,053,857 - +0.5
1,053,857 - +3.9
1,053,857 - +2.0
1,053,857 - +0.2
1,053,857 - +1.2
1,053,857 - -1.2
1,053,868 - +0.2
1,053,868 - +0.1

Or see this region's nucleotide sequence