Strain Fitness in Sinorhizobium meliloti 1021 around SMc00036

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00035 and SMc00036 are separated by 90 nucleotidesSMc00036 and SMc00037 are separated by 387 nucleotides SMc00035: SMc00035 - hypothetical protein, at 1,049,693 to 1,050,703 SMc00035 SMc00036: SMc00036 - glutathione S-transferase, at 1,050,794 to 1,051,414 SMc00036 SMc00037: SMc00037 - transcriptional regulator, at 1,051,802 to 1,052,710 SMc00037 Position (kb) 1050 1051 1052Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1050.155 kb on + strand, within SMc00035at 1050.156 kb on - strand, within SMc00035at 1050.156 kb on - strand, within SMc00035at 1050.156 kb on - strand, within SMc00035at 1050.156 kb on - strand, within SMc00035at 1050.165 kb on - strand, within SMc00035at 1050.269 kb on + strand, within SMc00035at 1050.269 kb on + strand, within SMc00035at 1050.269 kb on + strand, within SMc00035at 1050.477 kb on + strand, within SMc00035at 1050.477 kb on + strand, within SMc00035at 1050.478 kb on - strand, within SMc00035at 1050.478 kb on - strand, within SMc00035at 1050.478 kb on - strand, within SMc00035at 1050.809 kb on + strandat 1050.811 kb on + strandat 1050.870 kb on - strand, within SMc00036at 1050.920 kb on + strand, within SMc00036at 1051.004 kb on + strand, within SMc00036at 1051.005 kb on - strand, within SMc00036at 1051.005 kb on - strand, within SMc00036at 1051.006 kb on + strand, within SMc00036at 1051.007 kb on - strand, within SMc00036at 1051.088 kb on + strand, within SMc00036at 1051.088 kb on + strand, within SMc00036at 1051.088 kb on + strand, within SMc00036at 1051.088 kb on + strand, within SMc00036at 1051.088 kb on + strand, within SMc00036at 1051.088 kb on + strand, within SMc00036at 1051.088 kb on + strand, within SMc00036at 1051.089 kb on - strand, within SMc00036at 1051.195 kb on + strand, within SMc00036at 1051.195 kb on + strand, within SMc00036at 1051.280 kb on + strand, within SMc00036at 1051.281 kb on - strand, within SMc00036at 1051.467 kb on - strandat 1051.790 kb on + strandat 1051.954 kb on + strand, within SMc00037at 1051.955 kb on - strand, within SMc00037at 1052.400 kb on + strand, within SMc00037at 1052.400 kb on + strand, within SMc00037at 1052.401 kb on - strand, within SMc00037at 1052.401 kb on - strand, within SMc00037at 1052.401 kb on - strand, within SMc00037at 1052.401 kb on - strand, within SMc00037at 1052.401 kb on - strand, within SMc00037at 1052.401 kb on - strand, within SMc00037

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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1,050,155 + SMc00035 0.46 +0.6
1,050,156 - SMc00035 0.46 +0.6
1,050,156 - SMc00035 0.46 -3.2
1,050,156 - SMc00035 0.46 +0.8
1,050,156 - SMc00035 0.46 +0.0
1,050,165 - SMc00035 0.47 +1.6
1,050,269 + SMc00035 0.57 +0.2
1,050,269 + SMc00035 0.57 -0.3
1,050,269 + SMc00035 0.57 -1.2
1,050,477 + SMc00035 0.78 +0.5
1,050,477 + SMc00035 0.78 +0.2
1,050,478 - SMc00035 0.78 +0.1
1,050,478 - SMc00035 0.78 +0.4
1,050,478 - SMc00035 0.78 +0.1
1,050,809 + -1.9
1,050,811 + -0.2
1,050,870 - SMc00036 0.12 -0.4
1,050,920 + SMc00036 0.20 -1.7
1,051,004 + SMc00036 0.34 -3.6
1,051,005 - SMc00036 0.34 +1.5
1,051,005 - SMc00036 0.34 +2.8
1,051,006 + SMc00036 0.34 +0.0
1,051,007 - SMc00036 0.34 +0.4
1,051,088 + SMc00036 0.47 -0.2
1,051,088 + SMc00036 0.47 -0.2
1,051,088 + SMc00036 0.47 +0.1
1,051,088 + SMc00036 0.47 +0.5
1,051,088 + SMc00036 0.47 +1.2
1,051,088 + SMc00036 0.47 -0.0
1,051,088 + SMc00036 0.47 +0.3
1,051,089 - SMc00036 0.48 -0.0
1,051,195 + SMc00036 0.65 -0.6
1,051,195 + SMc00036 0.65 +0.8
1,051,280 + SMc00036 0.78 -0.3
1,051,281 - SMc00036 0.78 -3.1
1,051,467 - +0.0
1,051,790 + -0.5
1,051,954 + SMc00037 0.17 +0.2
1,051,955 - SMc00037 0.17 +1.2
1,052,400 + SMc00037 0.66 -0.3
1,052,400 + SMc00037 0.66 +0.6
1,052,401 - SMc00037 0.66 -0.8
1,052,401 - SMc00037 0.66 +0.9
1,052,401 - SMc00037 0.66 -0.1
1,052,401 - SMc00037 0.66 +0.6
1,052,401 - SMc00037 0.66 +0.9
1,052,401 - SMc00037 0.66 +1.1

Or see this region's nucleotide sequence