Strain Fitness in Sinorhizobium meliloti 1021 around SMa1675

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1672 and SMa1674 are separated by 96 nucleotidesSMa1674 and SMa1675 overlap by 2 nucleotidesSMa1675 and SMa1676 are separated by 60 nucleotides SMa1672: SMa1672 - hypothetical protein, at 938,402 to 938,896 SMa1672 SMa1674: SMa1674 - hypothetical protein, at 938,993 to 939,304 SMa1674 SMa1675: SMa1675 - hypothetical protein, at 939,303 to 939,953 SMa1675 SMa1676: SMa1676 - hypothetical protein, at 940,014 to 941,072 SMa1676 Position (kb) 939 940Strain fitness (log2 ratio) -2 -1 0 1 2at 938.565 kb on + strand, within SMa1672at 938.619 kb on + strand, within SMa1672at 938.620 kb on - strand, within SMa1672at 938.620 kb on - strand, within SMa1672at 938.800 kb on + strand, within SMa1672at 938.800 kb on + strand, within SMa1672at 938.801 kb on - strand, within SMa1672at 938.801 kb on - strand, within SMa1672at 938.802 kb on + strand, within SMa1672at 938.802 kb on + strand, within SMa1672at 938.802 kb on + strand, within SMa1672at 938.802 kb on + strand, within SMa1672at 938.802 kb on + strand, within SMa1672at 938.803 kb on - strand, within SMa1672at 938.995 kb on - strandat 939.016 kb on + strandat 939.017 kb on - strandat 939.081 kb on + strand, within SMa1674at 939.082 kb on - strand, within SMa1674at 939.103 kb on - strand, within SMa1674at 939.267 kb on - strand, within SMa1674at 939.267 kb on - strand, within SMa1674at 939.267 kb on - strand, within SMa1674at 939.267 kb on - strand, within SMa1674at 939.269 kb on + strand, within SMa1674at 939.497 kb on - strand, within SMa1675at 939.498 kb on + strand, within SMa1675at 939.498 kb on + strand, within SMa1675at 939.499 kb on - strand, within SMa1675at 939.499 kb on - strand, within SMa1675at 939.556 kb on + strand, within SMa1675at 939.557 kb on - strand, within SMa1675at 939.557 kb on - strand, within SMa1675at 939.557 kb on - strand, within SMa1675at 939.558 kb on + strand, within SMa1675at 939.558 kb on + strand, within SMa1675at 939.559 kb on - strand, within SMa1675at 939.559 kb on - strand, within SMa1675at 939.560 kb on + strand, within SMa1675at 939.561 kb on - strand, within SMa1675at 939.644 kb on + strand, within SMa1675at 939.984 kb on + strandat 939.985 kb on - strandat 939.985 kb on - strandat 940.166 kb on - strand, within SMa1676at 940.244 kb on - strand, within SMa1676at 940.375 kb on + strand, within SMa1676at 940.375 kb on + strand, within SMa1676at 940.375 kb on + strand, within SMa1676at 940.375 kb on + strandat 940.375 kb on + strand, within SMa1676at 940.376 kb on - strand, within SMa1676at 940.376 kb on - strand, within SMa1676at 940.493 kb on - strand, within SMa1676at 940.615 kb on + strand, within SMa1676at 940.615 kb on + strand, within SMa1676at 940.615 kb on + strand, within SMa1676at 940.616 kb on - strand, within SMa1676at 940.652 kb on + strand, within SMa1676at 940.653 kb on - strand, within SMa1676at 940.680 kb on - strand, within SMa1676at 940.769 kb on - strand, within SMa1676at 940.769 kb on - strand, within SMa1676at 940.833 kb on + strand, within SMa1676at 940.833 kb on + strand, within SMa1676at 940.834 kb on - strand, within SMa1676at 940.898 kb on - strand, within SMa1676at 940.910 kb on + strand, within SMa1676at 940.952 kb on + strand, within SMa1676at 940.953 kb on - strand, within SMa1676

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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938,565 + SMa1672 0.33 -1.1
938,619 + SMa1672 0.44 +0.8
938,620 - SMa1672 0.44 +0.3
938,620 - SMa1672 0.44 -0.5
938,800 + SMa1672 0.80 -0.2
938,800 + SMa1672 0.80 -1.4
938,801 - SMa1672 0.81 -1.6
938,801 - SMa1672 0.81 -0.1
938,802 + SMa1672 0.81 +0.8
938,802 + SMa1672 0.81 -0.1
938,802 + SMa1672 0.81 -0.3
938,802 + SMa1672 0.81 -1.2
938,802 + SMa1672 0.81 +0.9
938,803 - SMa1672 0.81 -0.5
938,995 - -0.2
939,016 + +0.8
939,017 - +0.7
939,081 + SMa1674 0.28 +0.1
939,082 - SMa1674 0.29 -0.4
939,103 - SMa1674 0.35 -2.1
939,267 - SMa1674 0.88 -0.4
939,267 - SMa1674 0.88 +0.2
939,267 - SMa1674 0.88 +0.3
939,267 - SMa1674 0.88 -0.5
939,269 + SMa1674 0.88 -0.8
939,497 - SMa1675 0.30 +1.8
939,498 + SMa1675 0.30 +0.3
939,498 + SMa1675 0.30 -0.5
939,499 - SMa1675 0.30 -0.8
939,499 - SMa1675 0.30 -0.3
939,556 + SMa1675 0.39 +0.6
939,557 - SMa1675 0.39 -0.1
939,557 - SMa1675 0.39 -0.5
939,557 - SMa1675 0.39 +0.5
939,558 + SMa1675 0.39 +2.5
939,558 + SMa1675 0.39 +0.7
939,559 - SMa1675 0.39 +0.5
939,559 - SMa1675 0.39 +2.6
939,560 + SMa1675 0.39 +1.7
939,561 - SMa1675 0.40 -0.0
939,644 + SMa1675 0.52 +0.0
939,984 + -0.7
939,985 - +0.8
939,985 - +0.4
940,166 - SMa1676 0.14 -2.0
940,244 - SMa1676 0.22 +0.1
940,375 + SMa1676 0.34 -0.0
940,375 + SMa1676 0.34 -0.5
940,375 + SMa1676 0.34 +0.9
940,375 + +0.8
940,375 + SMa1676 0.34 -0.7
940,376 - SMa1676 0.34 +0.5
940,376 - SMa1676 0.34 +1.8
940,493 - SMa1676 0.45 +0.5
940,615 + SMa1676 0.57 +0.2
940,615 + SMa1676 0.57 -1.5
940,615 + SMa1676 0.57 -1.0
940,616 - SMa1676 0.57 +0.1
940,652 + SMa1676 0.60 -0.7
940,653 - SMa1676 0.60 +0.3
940,680 - SMa1676 0.63 +0.3
940,769 - SMa1676 0.71 +0.4
940,769 - SMa1676 0.71 -0.4
940,833 + SMa1676 0.77 -0.3
940,833 + SMa1676 0.77 -0.1
940,834 - SMa1676 0.77 +1.4
940,898 - SMa1676 0.83 +0.4
940,910 + SMa1676 0.85 -0.6
940,952 + SMa1676 0.89 -0.3
940,953 - SMa1676 0.89 +0.1

Or see this region's nucleotide sequence