Strain Fitness in Sinorhizobium meliloti 1021 around SMa1644

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1641 and SMa1643 overlap by 4 nucleotidesSMa1643 and SMa1644 are separated by 97 nucleotidesSMa1644 and SMa5010 are separated by 177 nucleotidesSMa5010 and SMa1646 are separated by 363 nucleotides SMa1641: SMa1641 - NreB protein, at 914,013 to 915,335 SMa1641 SMa1643: SMa1643 - hypothetical protein, at 915,332 to 915,670 SMa1643 SMa1644: SMa1644 - ABC transporter permease, at 915,768 to 916,487 SMa1644 SMa5010: SMa5010 - hypothetical protein, at 916,665 to 917,003 SMa5010 SMa1646: SMa1646 - ABC transporter ATP-binding protein, at 917,367 to 918,389 SMa1646 Position (kb) 915 916 917Strain fitness (log2 ratio) -2 -1 0 1 2at 914.908 kb on + strand, within SMa1641at 914.966 kb on + strand, within SMa1641at 915.076 kb on - strand, within SMa1641at 915.565 kb on + strand, within SMa1643at 915.587 kb on - strand, within SMa1643at 915.726 kb on - strandat 915.804 kb on + strandat 915.805 kb on - strandat 915.825 kb on - strandat 915.825 kb on - strandat 915.945 kb on + strand, within SMa1644at 915.945 kb on + strand, within SMa1644at 915.946 kb on - strand, within SMa1644at 916.034 kb on - strand, within SMa1644at 916.064 kb on + strand, within SMa1644at 916.065 kb on - strand, within SMa1644at 916.065 kb on - strand, within SMa1644at 916.451 kb on - strandat 916.453 kb on + strandat 916.454 kb on - strandat 916.454 kb on - strandat 916.571 kb on - strandat 916.678 kb on - strandat 916.687 kb on + strandat 916.724 kb on - strand, within SMa5010at 916.879 kb on - strand, within SMa5010at 917.001 kb on + strandat 917.002 kb on - strandat 917.002 kb on - strandat 917.005 kb on + strandat 917.027 kb on + strandat 917.028 kb on - strandat 917.065 kb on - strandat 917.133 kb on + strandat 917.171 kb on + strandat 917.233 kb on + strandat 917.324 kb on - strandat 917.325 kb on + strandat 917.325 kb on + strandat 917.362 kb on + strandat 917.363 kb on - strandat 917.368 kb on + strandat 917.369 kb on - strandat 917.454 kb on - strandat 917.454 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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914,908 + SMa1641 0.68 +0.5
914,966 + SMa1641 0.72 +0.0
915,076 - SMa1641 0.80 +1.0
915,565 + SMa1643 0.69 -0.8
915,587 - SMa1643 0.75 -0.1
915,726 - -0.1
915,804 + -0.3
915,805 - -0.7
915,825 - -1.0
915,825 - -1.2
915,945 + SMa1644 0.25 -1.4
915,945 + SMa1644 0.25 -0.3
915,946 - SMa1644 0.25 +0.0
916,034 - SMa1644 0.37 -1.5
916,064 + SMa1644 0.41 -1.7
916,065 - SMa1644 0.41 -0.5
916,065 - SMa1644 0.41 -1.4
916,451 - -1.4
916,453 + -0.7
916,454 - +0.0
916,454 - -0.2
916,571 - +0.4
916,678 - -0.3
916,687 + -0.8
916,724 - SMa5010 0.17 -2.6
916,879 - SMa5010 0.63 +0.3
917,001 + +0.4
917,002 - +0.9
917,002 - +2.5
917,005 + -0.8
917,027 + +2.4
917,028 - +0.6
917,065 - +0.5
917,133 + +0.6
917,171 + +0.9
917,233 + +0.8
917,324 - -0.8
917,325 + -0.6
917,325 + -0.7
917,362 + +0.6
917,363 - -0.6
917,368 + +0.5
917,369 - -0.1
917,454 - -0.7
917,454 - -0.5

Or see this region's nucleotide sequence