Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0997 and SMa0998 are separated by 23 nucleotides SMa0998 and SMa1001 are separated by 348 nucleotides SMa1001 and SMa1002 are separated by 154 nucleotides SMa1002 and SMa1004 are separated by 236 nucleotides
SMa0997: SMa0997 - transposase, fragment, at 553,196 to 553,492
SMa0997
SMa0998: SMa0998 - ISRm25b transposase, at 553,516 to 554,085
SMa0998
SMa1001: SMa1001 - hypothetical protein, at 554,434 to 555,633
SMa1001
SMa1002: SMa1002 - hypothetical protein, at 555,788 to 556,162
SMa1002
SMa1004: SMa1004 - hypothetical protein, at 556,399 to 556,761
SMa1004
Position (kb) 554
555
556 Strain fitness (log2 ratio) -2
-1
0
1
2 at 553.444 kb on + strand, within SMa0997 at 553.513 kb on + strand at 553.513 kb on + strand at 553.513 kb on + strand at 553.513 kb on + strand at 553.514 kb on - strand at 553.514 kb on - strand at 553.514 kb on - strand at 553.514 kb on - strand at 553.666 kb on + strand, within SMa0998 at 553.687 kb on + strand, within SMa0998 at 553.687 kb on + strand, within SMa0998 at 553.827 kb on - strand, within SMa0998 at 554.049 kb on + strand at 554.050 kb on - strand at 554.050 kb on - strand at 554.050 kb on - strand at 554.050 kb on - strand at 554.050 kb on - strand at 554.052 kb on + strand at 554.053 kb on - strand at 554.166 kb on - strand at 554.340 kb on + strand at 554.340 kb on + strand at 554.341 kb on - strand at 554.341 kb on - strand at 554.341 kb on - strand at 554.341 kb on - strand at 554.341 kb on - strand at 554.341 kb on - strand at 554.344 kb on + strand at 554.374 kb on - strand at 554.375 kb on + strand at 554.376 kb on - strand at 554.376 kb on - strand at 554.379 kb on + strand at 554.379 kb on + strand at 554.380 kb on - strand at 554.380 kb on - strand at 554.385 kb on - strand at 554.969 kb on + strand, within SMa1001 at 555.128 kb on + strand, within SMa1001 at 555.233 kb on + strand, within SMa1001 at 555.233 kb on + strand, within SMa1001 at 555.234 kb on - strand, within SMa1001 at 555.234 kb on - strand, within SMa1001 at 555.234 kb on - strand, within SMa1001 at 555.382 kb on + strand, within SMa1001 at 555.383 kb on - strand, within SMa1001 at 555.405 kb on - strand, within SMa1001 at 555.535 kb on - strand at 555.563 kb on + strand at 555.563 kb on + strand at 555.564 kb on - strand at 555.568 kb on + strand at 555.568 kb on + strand at 555.568 kb on + strand at 555.568 kb on + strand at 555.632 kb on - strand at 555.673 kb on + strand at 555.674 kb on - strand at 555.674 kb on - strand at 555.716 kb on + strand at 555.717 kb on - strand at 555.717 kb on - strand at 555.717 kb on - strand at 555.767 kb on + strand at 555.768 kb on - strand at 555.768 kb on - strand at 555.778 kb on - strand at 555.834 kb on - strand, within SMa1002 at 555.963 kb on + strand, within SMa1002 at 555.964 kb on - strand, within SMa1002 at 556.168 kb on + strand at 556.201 kb on - strand at 556.217 kb on + strand at 556.218 kb on - strand at 556.278 kb on + strand at 556.349 kb on + strand at 556.350 kb on - strand at 556.350 kb on - strand at 556.408 kb on + strand at 556.408 kb on + strand at 556.408 kb on + strand at 556.409 kb on - strand at 556.608 kb on + strand, within SMa1004 at 556.608 kb on + strand, within SMa1004 at 556.625 kb on + strand, within SMa1004 at 556.625 kb on + strand, within SMa1004 at 556.626 kb on - strand, within SMa1004 at 556.626 kb on - strand, within SMa1004
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 553,444 + SMa0997 0.84 +1.7 553,513 + +0.0 553,513 + -1.2 553,513 + -1.1 553,513 + -0.4 553,514 - +0.2 553,514 - -1.1 553,514 - -1.1 553,514 - -0.5 553,666 + SMa0998 0.26 +0.2 553,687 + SMa0998 0.30 -1.4 553,687 + SMa0998 0.30 +0.1 553,827 - SMa0998 0.55 -0.3 554,049 + +1.3 554,050 - -0.5 554,050 - -1.3 554,050 - -0.7 554,050 - -0.5 554,050 - +0.3 554,052 + -0.4 554,053 - +0.8 554,166 - -0.5 554,340 + -0.9 554,340 + +1.1 554,341 - +0.7 554,341 - +1.9 554,341 - -0.5 554,341 - -0.1 554,341 - +1.0 554,341 - -1.6 554,344 + -1.9 554,374 - -1.5 554,375 + -0.3 554,376 - -0.5 554,376 - +0.4 554,379 + -1.6 554,379 + -1.5 554,380 - +1.5 554,380 - -0.2 554,385 - +2.1 554,969 + SMa1001 0.45 -0.4 555,128 + SMa1001 0.58 -0.6 555,233 + SMa1001 0.67 +1.7 555,233 + SMa1001 0.67 +0.5 555,234 - SMa1001 0.67 -0.9 555,234 - SMa1001 0.67 -1.0 555,234 - SMa1001 0.67 +0.1 555,382 + SMa1001 0.79 +1.3 555,383 - SMa1001 0.79 +1.0 555,405 - SMa1001 0.81 -0.1 555,535 - -0.9 555,563 + -0.3 555,563 + -2.3 555,564 - +0.9 555,568 + -1.4 555,568 + -1.8 555,568 + -0.1 555,568 + -1.6 555,632 - -0.2 555,673 + -1.7 555,674 - +1.3 555,674 - +0.1 555,716 + +0.3 555,717 - -0.6 555,717 - -0.4 555,717 - +0.0 555,767 + +0.0 555,768 - -0.0 555,768 - +1.0 555,778 - +0.1 555,834 - SMa1002 0.12 -1.1 555,963 + SMa1002 0.47 +0.4 555,964 - SMa1002 0.47 +0.4 556,168 + +0.3 556,201 - -0.3 556,217 + -0.4 556,218 - +1.6 556,278 + -1.5 556,349 + +0.6 556,350 - -0.7 556,350 - -2.0 556,408 + -2.2 556,408 + -0.6 556,408 + -0.5 556,409 - -1.0 556,608 + SMa1004 0.58 -0.9 556,608 + SMa1004 0.58 -0.3 556,625 + SMa1004 0.62 -0.3 556,625 + SMa1004 0.62 -0.9 556,626 - SMa1004 0.63 -0.0 556,626 - SMa1004 0.63 -0.1
Or see this region's nucleotide sequence