Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0827 and SMa0829 are separated by 90 nucleotides SMa0829 and SMa0830 are separated by 53 nucleotides
SMa0827: SMa0827 - NifD nitrogenase molybdenum-iron protein alpha chain, at 454,549 to 456,051
SMa0827
SMa0829: SMa0829 - NifK nitrogenase molybdenum-iron protein beta chain, at 456,142 to 457,683
SMa0829
SMa0830: SMa0830 - nitrogenase molybdenum-cofactor biosynthesis protein NifE, at 457,737 to 459,167
SMa0830
Position (kb) 456
457
458 Strain fitness (log2 ratio) -2
-1
0
1
2 at 455.144 kb on + strand, within SMa0827 at 455.219 kb on - strand, within SMa0827 at 455.233 kb on + strand, within SMa0827 at 455.234 kb on - strand, within SMa0827 at 455.258 kb on - strand, within SMa0827 at 455.297 kb on + strand, within SMa0827 at 455.664 kb on + strand, within SMa0827 at 455.696 kb on + strand, within SMa0827 at 455.749 kb on + strand, within SMa0827 at 455.773 kb on + strand, within SMa0827 at 455.773 kb on + strand, within SMa0827 at 455.774 kb on - strand, within SMa0827 at 455.920 kb on + strand at 455.977 kb on - strand at 455.996 kb on - strand at 456.199 kb on + strand at 456.306 kb on - strand, within SMa0829 at 456.437 kb on - strand, within SMa0829 at 456.553 kb on - strand, within SMa0829 at 456.553 kb on - strand, within SMa0829 at 456.557 kb on - strand, within SMa0829 at 456.557 kb on - strand, within SMa0829 at 456.558 kb on + strand, within SMa0829 at 456.745 kb on - strand, within SMa0829 at 456.789 kb on - strand, within SMa0829 at 456.886 kb on + strand, within SMa0829 at 456.922 kb on - strand, within SMa0829 at 456.949 kb on + strand, within SMa0829 at 456.950 kb on - strand, within SMa0829 at 456.950 kb on - strand, within SMa0829 at 457.021 kb on + strand, within SMa0829 at 457.026 kb on + strand, within SMa0829 at 457.046 kb on - strand, within SMa0829 at 457.084 kb on + strand, within SMa0829 at 457.085 kb on - strand, within SMa0829 at 457.128 kb on - strand, within SMa0829 at 457.231 kb on + strand, within SMa0829 at 457.259 kb on + strand, within SMa0829 at 457.471 kb on + strand, within SMa0829 at 457.660 kb on + strand at 457.661 kb on - strand at 457.666 kb on + strand at 457.667 kb on - strand at 457.667 kb on - strand at 457.667 kb on - strand at 457.667 kb on - strand at 457.674 kb on + strand at 457.674 kb on + strand at 457.812 kb on - strand at 458.052 kb on - strand, within SMa0830 at 458.158 kb on + strand, within SMa0830 at 458.158 kb on + strand, within SMa0830 at 458.159 kb on - strand, within SMa0830 at 458.330 kb on + strand, within SMa0830 at 458.471 kb on + strand, within SMa0830 at 458.471 kb on + strand, within SMa0830 at 458.608 kb on + strand, within SMa0830 at 458.609 kb on - strand, within SMa0830
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 455,144 + SMa0827 0.40 +0.7 455,219 - SMa0827 0.45 +0.4 455,233 + SMa0827 0.46 +0.1 455,234 - SMa0827 0.46 -0.1 455,258 - SMa0827 0.47 +1.0 455,297 + SMa0827 0.50 -0.7 455,664 + SMa0827 0.74 +0.2 455,696 + SMa0827 0.76 +1.1 455,749 + SMa0827 0.80 -0.2 455,773 + SMa0827 0.81 -0.5 455,773 + SMa0827 0.81 -0.4 455,774 - SMa0827 0.82 +0.4 455,920 + -2.0 455,977 - +0.3 455,996 - -0.8 456,199 + +0.4 456,306 - SMa0829 0.11 -0.1 456,437 - SMa0829 0.19 +0.2 456,553 - SMa0829 0.27 -0.3 456,553 - SMa0829 0.27 -1.0 456,557 - SMa0829 0.27 -0.1 456,557 - SMa0829 0.27 +0.0 456,558 + SMa0829 0.27 +0.7 456,745 - SMa0829 0.39 -0.6 456,789 - SMa0829 0.42 +0.8 456,886 + SMa0829 0.48 +0.6 456,922 - SMa0829 0.51 -0.1 456,949 + SMa0829 0.52 -0.4 456,950 - SMa0829 0.52 +1.0 456,950 - SMa0829 0.52 +1.5 457,021 + SMa0829 0.57 +0.3 457,026 + SMa0829 0.57 +0.1 457,046 - SMa0829 0.59 -0.4 457,084 + SMa0829 0.61 +0.5 457,085 - SMa0829 0.61 +0.1 457,128 - SMa0829 0.64 -1.1 457,231 + SMa0829 0.71 -1.6 457,259 + SMa0829 0.72 +1.6 457,471 + SMa0829 0.86 -0.3 457,660 + -0.8 457,661 - -0.2 457,666 + +0.5 457,667 - -0.2 457,667 - +1.7 457,667 - -0.1 457,667 - +0.9 457,674 + +2.2 457,674 + -0.0 457,812 - +0.0 458,052 - SMa0830 0.22 +0.2 458,158 + SMa0830 0.29 -1.0 458,158 + SMa0830 0.29 +0.8 458,159 - SMa0830 0.29 -1.4 458,330 + SMa0830 0.41 -0.2 458,471 + SMa0830 0.51 +0.0 458,471 + SMa0830 0.51 -0.8 458,608 + SMa0830 0.61 +0.1 458,609 - SMa0830 0.61 -1.9
Or see this region's nucleotide sequence