Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0683 and SMa0684 are separated by 145 nucleotides SMa0684 and SMa0687 are separated by 513 nucleotides
SMa0683: SMa0683 - Cation efflux protein, at 368,879 to 369,805
SMa0683
SMa0684: SMa0684 - transport protein, at 369,951 to 371,276
SMa0684
SMa0687: SMa0687 - hypothetical protein, at 371,790 to 372,296
SMa0687
Position (kb)
369
370
371
372 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 369.176 kb on - strand, within SMa0683 at 369.222 kb on - strand, within SMa0683 at 369.222 kb on - strand, within SMa0683 at 369.240 kb on + strand, within SMa0683 at 369.242 kb on + strand, within SMa0683 at 369.243 kb on - strand, within SMa0683 at 369.435 kb on + strand, within SMa0683 at 369.533 kb on - strand, within SMa0683 at 369.626 kb on + strand, within SMa0683 at 369.626 kb on + strand, within SMa0683 at 369.688 kb on - strand, within SMa0683 at 369.737 kb on - strand at 369.805 kb on + strand at 369.805 kb on + strand at 369.805 kb on + strand at 369.806 kb on - strand at 369.996 kb on + strand at 369.997 kb on - strand at 369.997 kb on - strand at 369.997 kb on - strand at 369.997 kb on - strand at 369.997 kb on - strand at 369.998 kb on + strand at 369.998 kb on + strand at 369.999 kb on - strand at 369.999 kb on - strand at 369.999 kb on - strand at 370.000 kb on + strand at 370.000 kb on + strand at 370.001 kb on - strand at 370.001 kb on - strand at 370.029 kb on + strand at 370.029 kb on + strand at 370.030 kb on - strand at 370.030 kb on - strand at 370.030 kb on - strand at 370.180 kb on + strand, within SMa0684 at 370.181 kb on - strand, within SMa0684 at 370.186 kb on - strand, within SMa0684 at 370.188 kb on - strand, within SMa0684 at 370.225 kb on + strand, within SMa0684 at 370.613 kb on + strand, within SMa0684 at 370.613 kb on + strand, within SMa0684 at 370.806 kb on - strand, within SMa0684 at 370.811 kb on - strand, within SMa0684 at 371.035 kb on + strand, within SMa0684 at 371.036 kb on - strand, within SMa0684 at 371.048 kb on + strand, within SMa0684 at 371.049 kb on - strand, within SMa0684 at 371.050 kb on + strand, within SMa0684 at 371.050 kb on + strand, within SMa0684 at 371.051 kb on - strand, within SMa0684 at 371.051 kb on - strand, within SMa0684 at 371.057 kb on - strand, within SMa0684 at 371.057 kb on - strand, within SMa0684 at 371.057 kb on - strand, within SMa0684 at 371.214 kb on - strand at 371.232 kb on - strand at 371.308 kb on - strand at 371.308 kb on - strand at 371.312 kb on - strand at 371.312 kb on - strand at 371.312 kb on - strand at 371.314 kb on + strand at 371.314 kb on + strand at 371.315 kb on - strand at 371.315 kb on - strand at 371.379 kb on + strand at 371.380 kb on - strand at 371.380 kb on - strand at 371.397 kb on + strand at 371.397 kb on + strand at 371.398 kb on - strand at 371.398 kb on - strand at 371.510 kb on - strand at 371.510 kb on - strand at 371.713 kb on - strand at 371.713 kb on - strand at 371.783 kb on + strand at 371.787 kb on + strand at 371.788 kb on - strand at 371.788 kb on - strand at 371.791 kb on + strand at 371.791 kb on + strand at 371.791 kb on + strand at 371.792 kb on - strand at 371.792 kb on - strand at 371.796 kb on - strand at 371.796 kb on - strand at 371.912 kb on - strand, within SMa0687 at 371.942 kb on - strand, within SMa0687 at 371.942 kb on - strand, within SMa0687 at 372.012 kb on + strand, within SMa0687 at 372.013 kb on - strand, within SMa0687 at 372.013 kb on - strand, within SMa0687 at 372.016 kb on - strand, within SMa0687 at 372.016 kb on - strand, within SMa0687 at 372.062 kb on - strand, within SMa0687 at 372.073 kb on + strand, within SMa0687 at 372.074 kb on - strand, within SMa0687 at 372.100 kb on - strand, within SMa0687 at 372.202 kb on + strand, within SMa0687
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 369,176 - SMa0683 0.32 +1.9 369,222 - SMa0683 0.37 +0.4 369,222 - SMa0683 0.37 -0.3 369,240 + SMa0683 0.39 -0.6 369,242 + SMa0683 0.39 -0.8 369,243 - SMa0683 0.39 +0.7 369,435 + SMa0683 0.60 -0.4 369,533 - SMa0683 0.71 -1.7 369,626 + SMa0683 0.81 -1.4 369,626 + SMa0683 0.81 -0.8 369,688 - SMa0683 0.87 +1.5 369,737 - -1.3 369,805 + -2.2 369,805 + +0.5 369,805 + -0.2 369,806 - -0.3 369,996 + +1.0 369,997 - +1.2 369,997 - -0.0 369,997 - -0.6 369,997 - +1.7 369,997 - -0.9 369,998 + +0.4 369,998 + +0.3 369,999 - -2.3 369,999 - -0.2 369,999 - +0.5 370,000 + -0.1 370,000 + -0.3 370,001 - +0.5 370,001 - -1.0 370,029 + +0.3 370,029 + +0.4 370,030 - +0.1 370,030 - +0.4 370,030 - -1.4 370,180 + SMa0684 0.17 -0.4 370,181 - SMa0684 0.17 -1.1 370,186 - SMa0684 0.18 -0.8 370,188 - SMa0684 0.18 -0.2 370,225 + SMa0684 0.21 +0.5 370,613 + SMa0684 0.50 +0.1 370,613 + SMa0684 0.50 -0.3 370,806 - SMa0684 0.64 -2.0 370,811 - SMa0684 0.65 -0.8 371,035 + SMa0684 0.82 +0.0 371,036 - SMa0684 0.82 -0.8 371,048 + SMa0684 0.83 +0.8 371,049 - SMa0684 0.83 -2.4 371,050 + SMa0684 0.83 -0.5 371,050 + SMa0684 0.83 -0.3 371,051 - SMa0684 0.83 -0.6 371,051 - SMa0684 0.83 -0.1 371,057 - SMa0684 0.83 +0.5 371,057 - SMa0684 0.83 -0.4 371,057 - SMa0684 0.83 -0.7 371,214 - +0.0 371,232 - -0.3 371,308 - -0.8 371,308 - +0.1 371,312 - -0.4 371,312 - -0.7 371,312 - -0.2 371,314 + -0.5 371,314 + +0.0 371,315 - +1.1 371,315 - -0.9 371,379 + -0.1 371,380 - +0.1 371,380 - -0.5 371,397 + +0.1 371,397 + -1.3 371,398 - -2.8 371,398 - +0.6 371,510 - -0.9 371,510 - -1.7 371,713 - +0.4 371,713 - +0.4 371,783 + -0.1 371,787 + -0.8 371,788 - +0.9 371,788 - -0.4 371,791 + +1.6 371,791 + -1.0 371,791 + +1.7 371,792 - -0.1 371,792 - +1.7 371,796 - -0.5 371,796 - +0.2 371,912 - SMa0687 0.24 -0.9 371,942 - SMa0687 0.30 -0.3 371,942 - SMa0687 0.30 -1.0 372,012 + SMa0687 0.44 +0.3 372,013 - SMa0687 0.44 -0.8 372,013 - SMa0687 0.44 +1.2 372,016 - SMa0687 0.45 -0.2 372,016 - SMa0687 0.45 +0.0 372,062 - SMa0687 0.54 -0.2 372,073 + SMa0687 0.56 -0.1 372,074 - SMa0687 0.56 +1.1 372,100 - SMa0687 0.61 -0.3 372,202 + SMa0687 0.81 -0.2
Or see this region's nucleotide sequence