Strain Fitness in Sinorhizobium meliloti 1021 around SMa0684

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0683 and SMa0684 are separated by 145 nucleotidesSMa0684 and SMa0687 are separated by 513 nucleotides SMa0683: SMa0683 - Cation efflux protein, at 368,879 to 369,805 SMa0683 SMa0684: SMa0684 - transport protein, at 369,951 to 371,276 SMa0684 SMa0687: SMa0687 - hypothetical protein, at 371,790 to 372,296 SMa0687 Position (kb) 369 370 371 372Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 369.176 kb on - strand, within SMa0683at 369.222 kb on - strand, within SMa0683at 369.222 kb on - strand, within SMa0683at 369.240 kb on + strand, within SMa0683at 369.242 kb on + strand, within SMa0683at 369.243 kb on - strand, within SMa0683at 369.435 kb on + strand, within SMa0683at 369.533 kb on - strand, within SMa0683at 369.626 kb on + strand, within SMa0683at 369.626 kb on + strand, within SMa0683at 369.688 kb on - strand, within SMa0683at 369.737 kb on - strandat 369.805 kb on + strandat 369.805 kb on + strandat 369.805 kb on + strandat 369.806 kb on - strandat 369.996 kb on + strandat 369.997 kb on - strandat 369.997 kb on - strandat 369.997 kb on - strandat 369.997 kb on - strandat 369.997 kb on - strandat 369.998 kb on + strandat 369.998 kb on + strandat 369.999 kb on - strandat 369.999 kb on - strandat 369.999 kb on - strandat 370.000 kb on + strandat 370.000 kb on + strandat 370.001 kb on - strandat 370.001 kb on - strandat 370.029 kb on + strandat 370.029 kb on + strandat 370.030 kb on - strandat 370.030 kb on - strandat 370.030 kb on - strandat 370.180 kb on + strand, within SMa0684at 370.181 kb on - strand, within SMa0684at 370.186 kb on - strand, within SMa0684at 370.188 kb on - strand, within SMa0684at 370.225 kb on + strand, within SMa0684at 370.613 kb on + strand, within SMa0684at 370.613 kb on + strand, within SMa0684at 370.806 kb on - strand, within SMa0684at 370.811 kb on - strand, within SMa0684at 371.035 kb on + strand, within SMa0684at 371.036 kb on - strand, within SMa0684at 371.048 kb on + strand, within SMa0684at 371.049 kb on - strand, within SMa0684at 371.050 kb on + strand, within SMa0684at 371.050 kb on + strand, within SMa0684at 371.051 kb on - strand, within SMa0684at 371.051 kb on - strand, within SMa0684at 371.057 kb on - strand, within SMa0684at 371.057 kb on - strand, within SMa0684at 371.057 kb on - strand, within SMa0684at 371.214 kb on - strandat 371.232 kb on - strandat 371.308 kb on - strandat 371.308 kb on - strandat 371.312 kb on - strandat 371.312 kb on - strandat 371.312 kb on - strandat 371.314 kb on + strandat 371.314 kb on + strandat 371.315 kb on - strandat 371.315 kb on - strandat 371.379 kb on + strandat 371.380 kb on - strandat 371.380 kb on - strandat 371.397 kb on + strandat 371.397 kb on + strandat 371.398 kb on - strandat 371.398 kb on - strandat 371.510 kb on - strandat 371.510 kb on - strandat 371.713 kb on - strandat 371.713 kb on - strandat 371.783 kb on + strandat 371.787 kb on + strandat 371.788 kb on - strandat 371.788 kb on - strandat 371.791 kb on + strandat 371.791 kb on + strandat 371.791 kb on + strandat 371.792 kb on - strandat 371.792 kb on - strandat 371.796 kb on - strandat 371.796 kb on - strandat 371.912 kb on - strand, within SMa0687at 371.942 kb on - strand, within SMa0687at 371.942 kb on - strand, within SMa0687at 372.012 kb on + strand, within SMa0687at 372.013 kb on - strand, within SMa0687at 372.013 kb on - strand, within SMa0687at 372.016 kb on - strand, within SMa0687at 372.016 kb on - strand, within SMa0687at 372.062 kb on - strand, within SMa0687at 372.073 kb on + strand, within SMa0687at 372.074 kb on - strand, within SMa0687at 372.100 kb on - strand, within SMa0687at 372.202 kb on + strand, within SMa0687

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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369,176 - SMa0683 0.32 +1.9
369,222 - SMa0683 0.37 +0.4
369,222 - SMa0683 0.37 -0.3
369,240 + SMa0683 0.39 -0.6
369,242 + SMa0683 0.39 -0.8
369,243 - SMa0683 0.39 +0.7
369,435 + SMa0683 0.60 -0.4
369,533 - SMa0683 0.71 -1.7
369,626 + SMa0683 0.81 -1.4
369,626 + SMa0683 0.81 -0.8
369,688 - SMa0683 0.87 +1.5
369,737 - -1.3
369,805 + -2.2
369,805 + +0.5
369,805 + -0.2
369,806 - -0.3
369,996 + +1.0
369,997 - +1.2
369,997 - -0.0
369,997 - -0.6
369,997 - +1.7
369,997 - -0.9
369,998 + +0.4
369,998 + +0.3
369,999 - -2.3
369,999 - -0.2
369,999 - +0.5
370,000 + -0.1
370,000 + -0.3
370,001 - +0.5
370,001 - -1.0
370,029 + +0.3
370,029 + +0.4
370,030 - +0.1
370,030 - +0.4
370,030 - -1.4
370,180 + SMa0684 0.17 -0.4
370,181 - SMa0684 0.17 -1.1
370,186 - SMa0684 0.18 -0.8
370,188 - SMa0684 0.18 -0.2
370,225 + SMa0684 0.21 +0.5
370,613 + SMa0684 0.50 +0.1
370,613 + SMa0684 0.50 -0.3
370,806 - SMa0684 0.64 -2.0
370,811 - SMa0684 0.65 -0.8
371,035 + SMa0684 0.82 +0.0
371,036 - SMa0684 0.82 -0.8
371,048 + SMa0684 0.83 +0.8
371,049 - SMa0684 0.83 -2.4
371,050 + SMa0684 0.83 -0.5
371,050 + SMa0684 0.83 -0.3
371,051 - SMa0684 0.83 -0.6
371,051 - SMa0684 0.83 -0.1
371,057 - SMa0684 0.83 +0.5
371,057 - SMa0684 0.83 -0.4
371,057 - SMa0684 0.83 -0.7
371,214 - +0.0
371,232 - -0.3
371,308 - -0.8
371,308 - +0.1
371,312 - -0.4
371,312 - -0.7
371,312 - -0.2
371,314 + -0.5
371,314 + +0.0
371,315 - +1.1
371,315 - -0.9
371,379 + -0.1
371,380 - +0.1
371,380 - -0.5
371,397 + +0.1
371,397 + -1.3
371,398 - -2.8
371,398 - +0.6
371,510 - -0.9
371,510 - -1.7
371,713 - +0.4
371,713 - +0.4
371,783 + -0.1
371,787 + -0.8
371,788 - +0.9
371,788 - -0.4
371,791 + +1.6
371,791 + -1.0
371,791 + +1.7
371,792 - -0.1
371,792 - +1.7
371,796 - -0.5
371,796 - +0.2
371,912 - SMa0687 0.24 -0.9
371,942 - SMa0687 0.30 -0.3
371,942 - SMa0687 0.30 -1.0
372,012 + SMa0687 0.44 +0.3
372,013 - SMa0687 0.44 -0.8
372,013 - SMa0687 0.44 +1.2
372,016 - SMa0687 0.45 -0.2
372,016 - SMa0687 0.45 +0.0
372,062 - SMa0687 0.54 -0.2
372,073 + SMa0687 0.56 -0.1
372,074 - SMa0687 0.56 +1.1
372,100 - SMa0687 0.61 -0.3
372,202 + SMa0687 0.81 -0.2

Or see this region's nucleotide sequence