Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0551 and SMa0552 are separated by 92 nucleotides SMa0552 and SMa0554 overlap by 23 nucleotides
SMa0551: SMa0551 - N-ethylammeline chlorohydrolase, at 292,217 to 293,509
SMa0551
SMa0552: SMa0552 - cyclic amidohydrolase, at 293,602 to 294,093
SMa0552
SMa0554: SMa0554 - hypothetical protein, at 294,071 to 294,868
SMa0554
Position (kb) 293
294
295 Strain fitness (log2 ratio) -2
-1
0
1
2 at 292.801 kb on + strand, within SMa0551 at 292.910 kb on - strand, within SMa0551 at 292.910 kb on - strand, within SMa0551 at 293.077 kb on + strand, within SMa0551 at 293.078 kb on - strand, within SMa0551 at 293.080 kb on + strand, within SMa0551 at 293.100 kb on + strand, within SMa0551 at 293.101 kb on - strand, within SMa0551 at 293.101 kb on - strand, within SMa0551 at 293.101 kb on - strand, within SMa0551 at 293.151 kb on - strand, within SMa0551 at 293.292 kb on + strand, within SMa0551 at 293.446 kb on + strand at 293.447 kb on - strand at 293.447 kb on - strand at 293.489 kb on + strand at 293.489 kb on + strand at 293.489 kb on + strand at 293.489 kb on + strand at 293.490 kb on - strand at 293.490 kb on - strand at 293.559 kb on + strand at 293.595 kb on + strand at 293.595 kb on + strand at 293.596 kb on - strand at 293.596 kb on - strand at 293.601 kb on + strand at 293.602 kb on - strand at 293.602 kb on - strand at 293.602 kb on - strand at 293.702 kb on + strand, within SMa0552 at 293.736 kb on + strand, within SMa0552 at 293.955 kb on + strand, within SMa0552 at 293.963 kb on - strand, within SMa0552 at 293.996 kb on + strand, within SMa0552 at 293.997 kb on - strand, within SMa0552 at 293.997 kb on - strand, within SMa0552 at 293.997 kb on - strand, within SMa0552 at 293.997 kb on - strand, within SMa0552 at 294.057 kb on + strand at 294.058 kb on - strand at 294.058 kb on - strand at 294.222 kb on - strand, within SMa0554 at 294.222 kb on - strand, within SMa0554 at 294.222 kb on - strand, within SMa0554 at 294.222 kb on - strand, within SMa0554 at 294.233 kb on + strand, within SMa0554 at 294.259 kb on - strand, within SMa0554 at 294.259 kb on - strand, within SMa0554 at 294.293 kb on + strand, within SMa0554 at 294.399 kb on - strand, within SMa0554 at 294.425 kb on + strand, within SMa0554 at 294.426 kb on - strand, within SMa0554 at 294.542 kb on + strand, within SMa0554 at 294.569 kb on + strand, within SMa0554 at 294.570 kb on - strand, within SMa0554 at 294.570 kb on - strand, within SMa0554 at 294.593 kb on - strand, within SMa0554 at 294.627 kb on - strand, within SMa0554 at 294.730 kb on - strand, within SMa0554 at 294.774 kb on + strand, within SMa0554 at 294.922 kb on - strand at 294.922 kb on - strand at 294.934 kb on + strand at 294.943 kb on + strand at 294.944 kb on - strand at 295.050 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 292,801 + SMa0551 0.45 -0.2 292,910 - SMa0551 0.54 +0.6 292,910 - SMa0551 0.54 -0.5 293,077 + SMa0551 0.67 -2.1 293,078 - SMa0551 0.67 -2.1 293,080 + SMa0551 0.67 -0.1 293,100 + SMa0551 0.68 +0.3 293,101 - SMa0551 0.68 +0.9 293,101 - SMa0551 0.68 +1.3 293,101 - SMa0551 0.68 +0.3 293,151 - SMa0551 0.72 +1.9 293,292 + SMa0551 0.83 -0.7 293,446 + +0.2 293,447 - +1.8 293,447 - +0.1 293,489 + +0.2 293,489 + -0.9 293,489 + -0.4 293,489 + -1.5 293,490 - +0.8 293,490 - -1.9 293,559 + +1.0 293,595 + -1.3 293,595 + -0.3 293,596 - -0.1 293,596 - -1.9 293,601 + -0.6 293,602 - -0.4 293,602 - +0.1 293,602 - -0.2 293,702 + SMa0552 0.20 +0.1 293,736 + SMa0552 0.27 +0.7 293,955 + SMa0552 0.72 +0.9 293,963 - SMa0552 0.73 +0.4 293,996 + SMa0552 0.80 -0.1 293,997 - SMa0552 0.80 +0.3 293,997 - SMa0552 0.80 +0.8 293,997 - SMa0552 0.80 +0.1 293,997 - SMa0552 0.80 +0.8 294,057 + -0.6 294,058 - +1.0 294,058 - +0.6 294,222 - SMa0554 0.19 +0.0 294,222 - SMa0554 0.19 +0.3 294,222 - SMa0554 0.19 +1.1 294,222 - SMa0554 0.19 +2.3 294,233 + SMa0554 0.20 +0.2 294,259 - SMa0554 0.24 +0.3 294,259 - SMa0554 0.24 +0.8 294,293 + SMa0554 0.28 +0.5 294,399 - SMa0554 0.41 -0.6 294,425 + SMa0554 0.44 +0.1 294,426 - SMa0554 0.44 -1.5 294,542 + SMa0554 0.59 -0.1 294,569 + SMa0554 0.62 +1.6 294,570 - SMa0554 0.63 +0.1 294,570 - SMa0554 0.63 -0.1 294,593 - SMa0554 0.65 +0.9 294,627 - SMa0554 0.70 +0.8 294,730 - SMa0554 0.83 -2.2 294,774 + SMa0554 0.88 -0.5 294,922 - -0.5 294,922 - -0.8 294,934 + +0.2 294,943 + +0.2 294,944 - +0.3 295,050 - -1.7
Or see this region's nucleotide sequence