Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0143 and SMa0144 overlap by 4 nucleotides SMa0144 and SMa0146 are separated by 5 nucleotides SMa0146 and SMa0148 are separated by 140 nucleotides
SMa0143: SMa0143 - RNA polymerase ECF sigma factor, at 78,965 to 79,507
SMa0143
SMa0144: SMa0144 - hypothetical protein, at 79,504 to 80,289
SMa0144
SMa0146: SMa0146 - hypothetical protein, at 80,295 to 80,819
SMa0146
SMa0148: SMa0148 - hypothetical protein, at 80,960 to 81,673
SMa0148
Position (kb) 80
81 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 79.359 kb on + strand, within SMa0143 at 79.359 kb on + strand, within SMa0143 at 79.360 kb on - strand, within SMa0143 at 79.360 kb on - strand, within SMa0143 at 79.360 kb on - strand, within SMa0143 at 79.360 kb on - strand, within SMa0143 at 79.360 kb on - strand, within SMa0143 at 79.458 kb on + strand at 79.532 kb on + strand at 79.583 kb on + strand, within SMa0144 at 80.287 kb on + strand at 80.287 kb on + strand at 80.287 kb on + strand at 80.287 kb on + strand at 80.287 kb on + strand at 80.287 kb on + strand at 80.287 kb on + strand at 80.287 kb on + strand at 80.378 kb on + strand, within SMa0146 at 80.379 kb on - strand, within SMa0146 at 80.464 kb on + strand, within SMa0146 at 80.465 kb on - strand, within SMa0146 at 80.465 kb on - strand, within SMa0146 at 80.540 kb on + strand, within SMa0146 at 80.541 kb on - strand, within SMa0146 at 80.658 kb on + strand, within SMa0146 at 80.658 kb on + strand, within SMa0146 at 80.855 kb on - strand at 80.942 kb on + strand at 80.943 kb on - strand at 80.943 kb on - strand at 80.943 kb on - strand at 81.101 kb on + strand, within SMa0148 at 81.110 kb on + strand, within SMa0148 at 81.111 kb on - strand, within SMa0148 at 81.179 kb on - strand, within SMa0148 at 81.189 kb on + strand, within SMa0148 at 81.189 kb on + strand, within SMa0148 at 81.189 kb on + strand, within SMa0148 at 81.189 kb on + strand, within SMa0148 at 81.189 kb on + strand, within SMa0148 at 81.190 kb on - strand, within SMa0148 at 81.190 kb on - strand, within SMa0148 at 81.190 kb on - strand, within SMa0148 at 81.190 kb on - strand, within SMa0148 at 81.190 kb on - strand, within SMa0148 at 81.190 kb on - strand, within SMa0148 at 81.190 kb on - strand, within SMa0148 at 81.190 kb on - strand, within SMa0148 at 81.298 kb on - strand, within SMa0148 at 81.472 kb on + strand, within SMa0148 at 81.472 kb on + strand, within SMa0148 at 81.472 kb on + strand, within SMa0148 at 81.472 kb on + strand, within SMa0148 at 81.669 kb on - strand at 81.669 kb on - strand at 81.723 kb on + strand at 81.724 kb on - strand at 81.724 kb on - strand at 81.775 kb on + strand at 81.775 kb on + strand at 81.776 kb on - strand at 81.786 kb on + strand at 81.786 kb on + strand at 81.788 kb on + strand at 81.790 kb on + strand at 81.790 kb on + strand at 81.791 kb on - strand at 81.791 kb on - strand at 81.791 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 79,359 + SMa0143 0.73 -1.0 79,359 + SMa0143 0.73 -0.4 79,360 - SMa0143 0.73 -0.4 79,360 - SMa0143 0.73 +0.5 79,360 - SMa0143 0.73 -0.4 79,360 - SMa0143 0.73 -0.4 79,360 - SMa0143 0.73 -0.3 79,458 + -1.1 79,532 + -2.0 79,583 + SMa0144 0.10 -0.7 80,287 + -0.4 80,287 + +0.4 80,287 + -0.8 80,287 + +1.6 80,287 + +2.8 80,287 + -1.5 80,287 + +0.2 80,287 + -1.0 80,378 + SMa0146 0.16 -3.3 80,379 - SMa0146 0.16 -0.1 80,464 + SMa0146 0.32 +0.3 80,465 - SMa0146 0.32 -1.3 80,465 - SMa0146 0.32 -1.2 80,540 + SMa0146 0.47 -0.1 80,541 - SMa0146 0.47 -1.3 80,658 + SMa0146 0.69 -0.7 80,658 + SMa0146 0.69 -0.8 80,855 - +1.1 80,942 + -0.7 80,943 - -0.5 80,943 - +0.5 80,943 - -0.3 81,101 + SMa0148 0.20 -0.6 81,110 + SMa0148 0.21 +1.0 81,111 - SMa0148 0.21 -0.9 81,179 - SMa0148 0.31 -0.2 81,189 + SMa0148 0.32 -0.1 81,189 + SMa0148 0.32 -1.4 81,189 + SMa0148 0.32 +0.7 81,189 + SMa0148 0.32 +0.9 81,189 + SMa0148 0.32 +0.1 81,190 - SMa0148 0.32 +0.3 81,190 - SMa0148 0.32 -0.3 81,190 - SMa0148 0.32 -0.6 81,190 - SMa0148 0.32 +0.5 81,190 - SMa0148 0.32 +0.4 81,190 - SMa0148 0.32 +0.1 81,190 - SMa0148 0.32 -1.6 81,190 - SMa0148 0.32 +1.2 81,298 - SMa0148 0.47 +0.8 81,472 + SMa0148 0.72 +0.2 81,472 + SMa0148 0.72 +3.2 81,472 + SMa0148 0.72 -0.6 81,472 + SMa0148 0.72 -0.7 81,669 - -0.3 81,669 - +0.8 81,723 + -0.5 81,724 - +2.4 81,724 - +1.0 81,775 + +0.2 81,775 + +0.5 81,776 - +0.2 81,786 + -1.0 81,786 + +1.3 81,788 + -0.6 81,790 + -0.3 81,790 + +0.1 81,791 - +0.6 81,791 - -0.9 81,791 - +1.1
Or see this region's nucleotide sequence