Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20867

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20866 and SM_b20867 are separated by 55 nucleotidesSM_b20867 and SM_b20868 are separated by 195 nucleotides SM_b20866: SM_b20866 - hypothetical protein, at 1,270,798 to 1,271,715 _b20866 SM_b20867: SM_b20867 - hypothetical protein, at 1,271,771 to 1,272,121 _b20867 SM_b20868: SM_b20868 - two-component sensor histidine kinase, at 1,272,317 to 1,276,006 _b20868 Position (kb) 1271 1272 1273Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1270.802 kb on + strandat 1270.802 kb on + strandat 1270.803 kb on - strandat 1270.876 kb on - strandat 1271.073 kb on + strand, within SM_b20866at 1271.150 kb on + strand, within SM_b20866at 1271.347 kb on + strand, within SM_b20866at 1271.348 kb on - strand, within SM_b20866at 1271.348 kb on - strand, within SM_b20866at 1271.348 kb on - strand, within SM_b20866at 1271.419 kb on + strand, within SM_b20866at 1271.599 kb on + strand, within SM_b20866at 1271.600 kb on - strand, within SM_b20866at 1271.652 kb on - strandat 1271.693 kb on + strandat 1271.693 kb on + strandat 1271.693 kb on + strandat 1271.694 kb on - strandat 1271.694 kb on - strandat 1271.694 kb on - strandat 1271.694 kb on - strandat 1271.694 kb on - strandat 1271.694 kb on - strandat 1271.694 kb on - strandat 1271.730 kb on + strandat 1271.731 kb on - strandat 1271.731 kb on - strandat 1271.772 kb on + strandat 1271.772 kb on + strandat 1271.773 kb on - strandat 1271.773 kb on - strandat 1271.773 kb on - strandat 1271.852 kb on + strand, within SM_b20867at 1271.852 kb on + strand, within SM_b20867at 1271.853 kb on - strand, within SM_b20867at 1271.905 kb on + strandat 1271.905 kb on + strand, within SM_b20867at 1271.905 kb on + strand, within SM_b20867at 1271.906 kb on - strand, within SM_b20867at 1271.906 kb on - strand, within SM_b20867at 1271.911 kb on + strand, within SM_b20867at 1271.911 kb on + strand, within SM_b20867at 1271.911 kb on + strand, within SM_b20867at 1271.911 kb on + strand, within SM_b20867at 1271.912 kb on - strand, within SM_b20867at 1271.912 kb on - strand, within SM_b20867at 1271.912 kb on - strand, within SM_b20867at 1271.912 kb on - strand, within SM_b20867at 1271.912 kb on - strand, within SM_b20867at 1271.980 kb on + strand, within SM_b20867at 1271.981 kb on - strand, within SM_b20867at 1271.981 kb on - strand, within SM_b20867at 1272.121 kb on + strandat 1272.164 kb on + strandat 1272.225 kb on + strandat 1272.225 kb on + strandat 1272.287 kb on + strandat 1272.288 kb on - strandat 1272.372 kb on + strandat 1272.372 kb on + strandat 1272.373 kb on - strandat 1272.373 kb on - strandat 1272.373 kb on - strandat 1272.377 kb on + strandat 1272.377 kb on + strandat 1272.448 kb on + strandat 1272.582 kb on + strandat 1272.582 kb on + strandat 1272.582 kb on + strandat 1272.582 kb on + strandat 1272.582 kb on + strandat 1272.583 kb on - strandat 1272.583 kb on - strandat 1272.583 kb on - strandat 1272.584 kb on + strandat 1272.584 kb on + strandat 1272.584 kb on + strandat 1272.584 kb on + strandat 1272.584 kb on + strandat 1272.584 kb on + strandat 1272.584 kb on + strandat 1272.585 kb on - strandat 1272.585 kb on - strandat 1272.600 kb on + strandat 1272.600 kb on + strandat 1272.639 kb on + strandat 1272.640 kb on - strandat 1272.759 kb on + strand, within SM_b20868at 1272.759 kb on + strand, within SM_b20868at 1272.762 kb on + strand, within SM_b20868at 1272.762 kb on + strand, within SM_b20868at 1272.763 kb on - strand, within SM_b20868at 1272.844 kb on + strand, within SM_b20868at 1272.844 kb on + strand, within SM_b20868at 1272.844 kb on + strand, within SM_b20868at 1272.844 kb on + strand, within SM_b20868at 1272.844 kb on + strand, within SM_b20868at 1272.845 kb on - strand, within SM_b20868at 1272.957 kb on - strand, within SM_b20868at 1272.971 kb on + strand, within SM_b20868at 1272.971 kb on + strand, within SM_b20868at 1272.972 kb on - strand, within SM_b20868at 1272.972 kb on - strand, within SM_b20868

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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1,270,802 + +2.7
1,270,802 + +0.4
1,270,803 - -0.2
1,270,876 - -0.5
1,271,073 + SM_b20866 0.30 +1.7
1,271,150 + SM_b20866 0.38 -1.4
1,271,347 + SM_b20866 0.60 +0.8
1,271,348 - SM_b20866 0.60 -1.5
1,271,348 - SM_b20866 0.60 +0.2
1,271,348 - SM_b20866 0.60 +2.5
1,271,419 + SM_b20866 0.68 +0.3
1,271,599 + SM_b20866 0.87 +0.8
1,271,600 - SM_b20866 0.87 +0.2
1,271,652 - -0.8
1,271,693 + -0.1
1,271,693 + +0.9
1,271,693 + -0.0
1,271,694 - -3.6
1,271,694 - -0.1
1,271,694 - +0.4
1,271,694 - +0.8
1,271,694 - -0.0
1,271,694 - +0.0
1,271,694 - -0.3
1,271,730 + +0.4
1,271,731 - +1.0
1,271,731 - -0.2
1,271,772 + -2.3
1,271,772 + -0.1
1,271,773 - -0.5
1,271,773 - -0.5
1,271,773 - -0.3
1,271,852 + SM_b20867 0.23 -0.1
1,271,852 + SM_b20867 0.23 -0.4
1,271,853 - SM_b20867 0.23 -0.5
1,271,905 + +1.8
1,271,905 + SM_b20867 0.38 -1.5
1,271,905 + SM_b20867 0.38 -0.4
1,271,906 - SM_b20867 0.38 -0.7
1,271,906 - SM_b20867 0.38 +0.1
1,271,911 + SM_b20867 0.40 -3.1
1,271,911 + SM_b20867 0.40 -0.3
1,271,911 + SM_b20867 0.40 +0.8
1,271,911 + SM_b20867 0.40 +0.4
1,271,912 - SM_b20867 0.40 -0.5
1,271,912 - SM_b20867 0.40 -1.2
1,271,912 - SM_b20867 0.40 -0.4
1,271,912 - SM_b20867 0.40 +0.3
1,271,912 - SM_b20867 0.40 +0.5
1,271,980 + SM_b20867 0.60 +0.5
1,271,981 - SM_b20867 0.60 -0.6
1,271,981 - SM_b20867 0.60 -0.1
1,272,121 + -0.9
1,272,164 + -0.2
1,272,225 + -0.3
1,272,225 + -0.3
1,272,287 + +0.4
1,272,288 - -0.4
1,272,372 + -0.2
1,272,372 + -0.3
1,272,373 - +0.0
1,272,373 - +0.5
1,272,373 - +0.2
1,272,377 + -0.2
1,272,377 + +0.0
1,272,448 + +0.2
1,272,582 + -1.4
1,272,582 + +1.4
1,272,582 + -0.3
1,272,582 + +0.4
1,272,582 + +0.8
1,272,583 - +1.1
1,272,583 - +0.4
1,272,583 - +0.7
1,272,584 + -1.0
1,272,584 + +1.0
1,272,584 + +0.3
1,272,584 + +0.5
1,272,584 + +1.8
1,272,584 + -0.4
1,272,584 + +0.2
1,272,585 - +0.3
1,272,585 - +0.0
1,272,600 + +0.1
1,272,600 + +0.8
1,272,639 + +0.1
1,272,640 - +0.0
1,272,759 + SM_b20868 0.12 +0.0
1,272,759 + SM_b20868 0.12 -0.3
1,272,762 + SM_b20868 0.12 +1.8
1,272,762 + SM_b20868 0.12 -0.2
1,272,763 - SM_b20868 0.12 -0.1
1,272,844 + SM_b20868 0.14 +0.8
1,272,844 + SM_b20868 0.14 -0.3
1,272,844 + SM_b20868 0.14 +1.1
1,272,844 + SM_b20868 0.14 +0.5
1,272,844 + SM_b20868 0.14 +1.1
1,272,845 - SM_b20868 0.14 +0.3
1,272,957 - SM_b20868 0.17 -0.1
1,272,971 + SM_b20868 0.18 +0.6
1,272,971 + SM_b20868 0.18 -0.1
1,272,972 - SM_b20868 0.18 -0.4
1,272,972 - SM_b20868 0.18 -0.9

Or see this region's nucleotide sequence