Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20407

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20406 and SM_b20407 are separated by 8 nucleotidesSM_b20407 and SM_b20408 are separated by 3 nucleotidesSM_b20408 and SM_b20409 overlap by 4 nucleotides SM_b20406: SM_b20406 - 5-oxoprolinase, at 420,019 to 422,133 _b20406 SM_b20407: SM_b20407 - 5-oxoprolinase, at 422,142 to 424,343 _b20407 SM_b20408: SM_b20408 - hypothetical protein, at 424,347 to 424,844 _b20408 SM_b20409: SM_b20409 - 3-oxoacyl-ACP reductase, at 424,841 to 425,671 _b20409 Position (kb) 422 423 424 425Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 421.192 kb on + strand, within SM_b20406at 421.192 kb on + strand, within SM_b20406at 421.192 kb on + strand, within SM_b20406at 421.280 kb on + strand, within SM_b20406at 421.281 kb on - strand, within SM_b20406at 421.347 kb on + strand, within SM_b20406at 421.510 kb on + strand, within SM_b20406at 421.510 kb on + strand, within SM_b20406at 421.511 kb on - strand, within SM_b20406at 421.511 kb on - strand, within SM_b20406at 421.512 kb on + strand, within SM_b20406at 421.512 kb on + strand, within SM_b20406at 421.513 kb on - strand, within SM_b20406at 421.699 kb on + strand, within SM_b20406at 421.798 kb on + strand, within SM_b20406at 421.798 kb on + strand, within SM_b20406at 421.799 kb on - strand, within SM_b20406at 421.799 kb on - strand, within SM_b20406at 421.799 kb on - strand, within SM_b20406at 421.960 kb on + strandat 421.960 kb on + strandat 421.961 kb on - strandat 421.961 kb on - strandat 421.961 kb on - strandat 421.961 kb on - strandat 421.962 kb on + strandat 421.963 kb on - strandat 421.994 kb on - strandat 422.119 kb on + strandat 422.227 kb on - strandat 422.227 kb on - strandat 422.304 kb on + strandat 422.305 kb on - strandat 422.388 kb on + strand, within SM_b20407at 422.485 kb on - strand, within SM_b20407at 422.542 kb on + strand, within SM_b20407at 422.543 kb on - strand, within SM_b20407at 422.543 kb on - strand, within SM_b20407at 422.591 kb on + strand, within SM_b20407at 422.592 kb on - strand, within SM_b20407at 422.592 kb on - strand, within SM_b20407at 422.751 kb on + strand, within SM_b20407at 422.755 kb on + strand, within SM_b20407at 422.755 kb on + strand, within SM_b20407at 422.756 kb on - strand, within SM_b20407at 422.790 kb on + strand, within SM_b20407at 422.848 kb on + strand, within SM_b20407at 422.880 kb on + strand, within SM_b20407at 422.881 kb on - strand, within SM_b20407at 422.986 kb on - strand, within SM_b20407at 422.986 kb on - strand, within SM_b20407at 423.046 kb on - strand, within SM_b20407at 423.046 kb on - strand, within SM_b20407at 423.046 kb on - strand, within SM_b20407at 423.124 kb on - strand, within SM_b20407at 423.242 kb on + strand, within SM_b20407at 423.321 kb on + strand, within SM_b20407at 423.322 kb on - strand, within SM_b20407at 423.522 kb on + strand, within SM_b20407at 423.522 kb on + strand, within SM_b20407at 423.522 kb on + strand, within SM_b20407at 423.522 kb on + strand, within SM_b20407at 423.523 kb on - strand, within SM_b20407at 423.523 kb on - strand, within SM_b20407at 423.523 kb on - strand, within SM_b20407at 423.523 kb on - strand, within SM_b20407at 423.591 kb on + strand, within SM_b20407at 423.591 kb on + strand, within SM_b20407at 423.591 kb on + strand, within SM_b20407at 423.591 kb on + strand, within SM_b20407at 423.592 kb on - strand, within SM_b20407at 423.592 kb on - strand, within SM_b20407at 423.701 kb on - strand, within SM_b20407at 423.840 kb on - strand, within SM_b20407at 423.882 kb on + strand, within SM_b20407at 423.882 kb on + strand, within SM_b20407at 423.915 kb on + strand, within SM_b20407at 423.915 kb on + strand, within SM_b20407at 423.916 kb on - strand, within SM_b20407at 423.916 kb on - strand, within SM_b20407at 423.916 kb on - strand, within SM_b20407at 423.916 kb on - strand, within SM_b20407at 423.916 kb on - strand, within SM_b20407at 423.916 kb on - strand, within SM_b20407at 423.916 kb on - strand, within SM_b20407at 423.916 kb on - strand, within SM_b20407at 423.960 kb on + strand, within SM_b20407at 423.960 kb on + strand, within SM_b20407at 423.962 kb on + strand, within SM_b20407at 423.963 kb on - strand, within SM_b20407at 423.963 kb on - strand, within SM_b20407at 424.360 kb on - strandat 424.360 kb on - strandat 424.431 kb on + strand, within SM_b20408at 424.432 kb on - strand, within SM_b20408at 424.432 kb on - strand, within SM_b20408at 424.432 kb on - strand, within SM_b20408at 424.432 kb on - strand, within SM_b20408at 424.432 kb on - strand, within SM_b20408at 424.432 kb on - strand, within SM_b20408at 424.433 kb on + strand, within SM_b20408at 424.433 kb on + strand, within SM_b20408at 424.434 kb on - strand, within SM_b20408at 424.458 kb on + strand, within SM_b20408at 424.591 kb on - strand, within SM_b20408at 424.610 kb on + strand, within SM_b20408at 424.948 kb on - strand, within SM_b20409at 424.948 kb on - strand, within SM_b20409at 425.061 kb on - strand, within SM_b20409at 425.061 kb on - strand, within SM_b20409at 425.205 kb on + strand, within SM_b20409at 425.205 kb on + strand, within SM_b20409at 425.205 kb on + strand, within SM_b20409at 425.206 kb on - strand, within SM_b20409at 425.206 kb on - strand, within SM_b20409at 425.305 kb on + strand, within SM_b20409at 425.305 kb on + strand, within SM_b20409at 425.306 kb on - strand, within SM_b20409at 425.307 kb on + strand, within SM_b20409at 425.308 kb on - strand, within SM_b20409at 425.308 kb on - strand, within SM_b20409

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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421,192 + SM_b20406 0.55 +0.3
421,192 + SM_b20406 0.55 +0.4
421,192 + SM_b20406 0.55 +0.9
421,280 + SM_b20406 0.60 +0.2
421,281 - SM_b20406 0.60 -1.0
421,347 + SM_b20406 0.63 -2.4
421,510 + SM_b20406 0.70 -0.5
421,510 + SM_b20406 0.70 +0.5
421,511 - SM_b20406 0.71 -0.7
421,511 - SM_b20406 0.71 +1.9
421,512 + SM_b20406 0.71 +0.3
421,512 + SM_b20406 0.71 -1.1
421,513 - SM_b20406 0.71 -0.0
421,699 + SM_b20406 0.79 -0.5
421,798 + SM_b20406 0.84 +1.6
421,798 + SM_b20406 0.84 +0.3
421,799 - SM_b20406 0.84 +0.4
421,799 - SM_b20406 0.84 -0.0
421,799 - SM_b20406 0.84 +0.9
421,960 + -0.9
421,960 + -1.3
421,961 - +0.7
421,961 - +1.0
421,961 - +1.2
421,961 - +3.4
421,962 + +1.3
421,963 - +0.0
421,994 - -0.3
422,119 + -0.3
422,227 - -0.3
422,227 - -1.2
422,304 + +0.2
422,305 - +1.3
422,388 + SM_b20407 0.11 -0.1
422,485 - SM_b20407 0.16 -0.3
422,542 + SM_b20407 0.18 +0.1
422,543 - SM_b20407 0.18 +1.0
422,543 - SM_b20407 0.18 -0.1
422,591 + SM_b20407 0.20 +0.5
422,592 - SM_b20407 0.20 +0.9
422,592 - SM_b20407 0.20 +0.3
422,751 + SM_b20407 0.28 +1.4
422,755 + SM_b20407 0.28 +0.7
422,755 + SM_b20407 0.28 +0.3
422,756 - SM_b20407 0.28 -0.0
422,790 + SM_b20407 0.29 -0.4
422,848 + SM_b20407 0.32 -0.5
422,880 + SM_b20407 0.34 +0.5
422,881 - SM_b20407 0.34 -0.9
422,986 - SM_b20407 0.38 +0.1
422,986 - SM_b20407 0.38 -0.6
423,046 - SM_b20407 0.41 -1.1
423,046 - SM_b20407 0.41 +1.4
423,046 - SM_b20407 0.41 -0.2
423,124 - SM_b20407 0.45 +1.0
423,242 + SM_b20407 0.50 -0.1
423,321 + SM_b20407 0.54 +2.2
423,322 - SM_b20407 0.54 +0.1
423,522 + SM_b20407 0.63 +0.2
423,522 + SM_b20407 0.63 -2.6
423,522 + SM_b20407 0.63 +0.5
423,522 + SM_b20407 0.63 +0.6
423,523 - SM_b20407 0.63 +1.6
423,523 - SM_b20407 0.63 -0.6
423,523 - SM_b20407 0.63 +0.3
423,523 - SM_b20407 0.63 -0.6
423,591 + SM_b20407 0.66 +0.2
423,591 + SM_b20407 0.66 -1.1
423,591 + SM_b20407 0.66 +2.5
423,591 + SM_b20407 0.66 -0.1
423,592 - SM_b20407 0.66 -0.3
423,592 - SM_b20407 0.66 +0.8
423,701 - SM_b20407 0.71 -0.5
423,840 - SM_b20407 0.77 +0.1
423,882 + SM_b20407 0.79 -0.6
423,882 + SM_b20407 0.79 -1.0
423,915 + SM_b20407 0.81 +0.7
423,915 + SM_b20407 0.81 -0.2
423,916 - SM_b20407 0.81 -3.2
423,916 - SM_b20407 0.81 +0.5
423,916 - SM_b20407 0.81 +0.7
423,916 - SM_b20407 0.81 +0.4
423,916 - SM_b20407 0.81 +0.8
423,916 - SM_b20407 0.81 -0.9
423,916 - SM_b20407 0.81 -0.8
423,916 - SM_b20407 0.81 +1.7
423,960 + SM_b20407 0.83 +0.0
423,960 + SM_b20407 0.83 -1.0
423,962 + SM_b20407 0.83 +1.5
423,963 - SM_b20407 0.83 -0.1
423,963 - SM_b20407 0.83 +0.1
424,360 - +0.2
424,360 - +0.1
424,431 + SM_b20408 0.17 +1.0
424,432 - SM_b20408 0.17 -1.1
424,432 - SM_b20408 0.17 -0.2
424,432 - SM_b20408 0.17 -0.2
424,432 - SM_b20408 0.17 -0.1
424,432 - SM_b20408 0.17 -0.4
424,432 - SM_b20408 0.17 +1.1
424,433 + SM_b20408 0.17 +0.2
424,433 + SM_b20408 0.17 -1.9
424,434 - SM_b20408 0.17 -0.2
424,458 + SM_b20408 0.22 -0.7
424,591 - SM_b20408 0.49 -0.3
424,610 + SM_b20408 0.53 +0.2
424,948 - SM_b20409 0.13 +0.6
424,948 - SM_b20409 0.13 +0.8
425,061 - SM_b20409 0.26 -0.4
425,061 - SM_b20409 0.26 -0.2
425,205 + SM_b20409 0.44 +1.0
425,205 + SM_b20409 0.44 +0.6
425,205 + SM_b20409 0.44 -0.7
425,206 - SM_b20409 0.44 +0.4
425,206 - SM_b20409 0.44 -3.5
425,305 + SM_b20409 0.56 -0.6
425,305 + SM_b20409 0.56 -0.1
425,306 - SM_b20409 0.56 -0.3
425,307 + SM_b20409 0.56 +2.1
425,308 - SM_b20409 0.56 +0.2
425,308 - SM_b20409 0.56 +1.3

Or see this region's nucleotide sequence