Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20298

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20297 and SM_b20298 overlap by 4 nucleotidesSM_b20298 and SM_b20299 are separated by 13 nucleotides SM_b20297: SM_b20297 - permease, at 303,470 to 304,750 _b20297 SM_b20298: SM_b20298 - hypothetical protein, at 304,747 to 305,682 _b20298 SM_b20299: SM_b20299 - N-acetylneuraminate lyase, at 305,696 to 306,595 _b20299 Position (kb) 304 305 306Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 303.897 kb on + strand, within SM_b20297at 303.898 kb on - strand, within SM_b20297at 303.935 kb on + strand, within SM_b20297at 303.952 kb on + strand, within SM_b20297at 303.953 kb on - strand, within SM_b20297at 304.028 kb on + strand, within SM_b20297at 304.029 kb on - strand, within SM_b20297at 304.052 kb on + strand, within SM_b20297at 304.052 kb on + strand, within SM_b20297at 304.052 kb on + strand, within SM_b20297at 304.052 kb on + strand, within SM_b20297at 304.052 kb on + strand, within SM_b20297at 304.053 kb on - strand, within SM_b20297at 304.053 kb on - strand, within SM_b20297at 304.053 kb on - strand, within SM_b20297at 304.283 kb on - strand, within SM_b20297at 304.350 kb on + strand, within SM_b20297at 304.351 kb on - strand, within SM_b20297at 304.382 kb on + strand, within SM_b20297at 304.382 kb on + strand, within SM_b20297at 304.382 kb on + strand, within SM_b20297at 304.383 kb on - strand, within SM_b20297at 304.646 kb on - strandat 305.102 kb on - strand, within SM_b20298at 305.167 kb on + strand, within SM_b20298at 305.167 kb on + strand, within SM_b20298at 305.167 kb on + strand, within SM_b20298at 305.167 kb on + strand, within SM_b20298at 305.170 kb on - strand, within SM_b20298at 305.219 kb on + strand, within SM_b20298at 305.220 kb on - strand, within SM_b20298at 305.371 kb on + strand, within SM_b20298at 305.372 kb on - strand, within SM_b20298at 305.596 kb on + strandat 305.596 kb on + strandat 305.596 kb on + strandat 305.597 kb on - strandat 305.598 kb on + strandat 305.598 kb on + strandat 305.598 kb on + strandat 305.599 kb on - strandat 305.599 kb on - strandat 305.693 kb on - strandat 305.693 kb on - strandat 305.714 kb on + strandat 305.816 kb on + strand, within SM_b20299at 305.816 kb on + strand, within SM_b20299at 305.816 kb on + strand, within SM_b20299at 305.817 kb on - strand, within SM_b20299at 305.817 kb on - strand, within SM_b20299at 305.817 kb on - strand, within SM_b20299at 305.873 kb on + strand, within SM_b20299at 306.017 kb on + strand, within SM_b20299at 306.017 kb on + strand, within SM_b20299at 306.021 kb on - strand, within SM_b20299at 306.021 kb on - strand, within SM_b20299at 306.096 kb on - strand, within SM_b20299at 306.096 kb on - strand, within SM_b20299at 306.097 kb on + strand, within SM_b20299at 306.097 kb on + strand, within SM_b20299at 306.098 kb on - strand, within SM_b20299at 306.098 kb on - strand, within SM_b20299at 306.181 kb on + strand, within SM_b20299at 306.182 kb on - strand, within SM_b20299at 306.182 kb on - strand, within SM_b20299at 306.182 kb on - strand, within SM_b20299at 306.242 kb on + strand, within SM_b20299at 306.243 kb on - strand, within SM_b20299at 306.243 kb on - strand, within SM_b20299at 306.243 kb on - strand, within SM_b20299at 306.312 kb on - strand, within SM_b20299at 306.312 kb on - strand, within SM_b20299at 306.314 kb on - strand, within SM_b20299at 306.594 kb on - strandat 306.661 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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303,897 + SM_b20297 0.33 -0.0
303,898 - SM_b20297 0.33 -0.1
303,935 + SM_b20297 0.36 -0.5
303,952 + SM_b20297 0.38 +0.6
303,953 - SM_b20297 0.38 -0.2
304,028 + SM_b20297 0.44 -0.1
304,029 - SM_b20297 0.44 -3.1
304,052 + SM_b20297 0.45 -0.5
304,052 + SM_b20297 0.45 -0.1
304,052 + SM_b20297 0.45 -0.5
304,052 + SM_b20297 0.45 +0.2
304,052 + SM_b20297 0.45 -1.2
304,053 - SM_b20297 0.46 +0.6
304,053 - SM_b20297 0.46 -0.8
304,053 - SM_b20297 0.46 +0.7
304,283 - SM_b20297 0.63 +1.1
304,350 + SM_b20297 0.69 +1.1
304,351 - SM_b20297 0.69 -0.6
304,382 + SM_b20297 0.71 +1.3
304,382 + SM_b20297 0.71 -0.6
304,382 + SM_b20297 0.71 -0.0
304,383 - SM_b20297 0.71 -0.4
304,646 - -1.1
305,102 - SM_b20298 0.38 -0.5
305,167 + SM_b20298 0.45 -0.6
305,167 + SM_b20298 0.45 +0.5
305,167 + SM_b20298 0.45 +0.7
305,167 + SM_b20298 0.45 +0.2
305,170 - SM_b20298 0.45 +1.9
305,219 + SM_b20298 0.50 -0.3
305,220 - SM_b20298 0.51 +1.1
305,371 + SM_b20298 0.67 +0.2
305,372 - SM_b20298 0.67 +0.6
305,596 + +0.2
305,596 + +0.6
305,596 + +0.2
305,597 - +0.8
305,598 + +0.1
305,598 + +0.7
305,598 + +0.0
305,599 - +0.9
305,599 - -0.8
305,693 - -0.0
305,693 - +0.2
305,714 + +1.3
305,816 + SM_b20299 0.13 +0.4
305,816 + SM_b20299 0.13 +1.9
305,816 + SM_b20299 0.13 -0.7
305,817 - SM_b20299 0.13 +0.4
305,817 - SM_b20299 0.13 +0.7
305,817 - SM_b20299 0.13 -1.2
305,873 + SM_b20299 0.20 +0.4
306,017 + SM_b20299 0.36 +0.3
306,017 + SM_b20299 0.36 +0.7
306,021 - SM_b20299 0.36 -1.3
306,021 - SM_b20299 0.36 +1.7
306,096 - SM_b20299 0.44 +0.1
306,096 - SM_b20299 0.44 -0.1
306,097 + SM_b20299 0.45 +0.6
306,097 + SM_b20299 0.45 +0.5
306,098 - SM_b20299 0.45 +0.3
306,098 - SM_b20299 0.45 +0.6
306,181 + SM_b20299 0.54 +0.5
306,182 - SM_b20299 0.54 -0.1
306,182 - SM_b20299 0.54 +0.7
306,182 - SM_b20299 0.54 -0.1
306,242 + SM_b20299 0.61 +0.1
306,243 - SM_b20299 0.61 +0.6
306,243 - SM_b20299 0.61 +0.7
306,243 - SM_b20299 0.61 +0.3
306,312 - SM_b20299 0.68 -0.6
306,312 - SM_b20299 0.68 +0.4
306,314 - SM_b20299 0.69 +0.9
306,594 - +0.1
306,661 - -0.2

Or see this region's nucleotide sequence