Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20178 and SM_b20179 are separated by 1 nucleotides SM_b20179 and SM_b20180 are separated by 3 nucleotides SM_b20180 and SM_b20181 are separated by 54 nucleotides
SM_b20178: SM_b20178 - hypothetical protein, at 195,575 to 196,762
_b20178
SM_b20179: SM_b20179 - hypothetical protein, at 196,764 to 197,738
_b20179
SM_b20180: SM_b20180 - hypothetical protein, at 197,742 to 198,221
_b20180
SM_b20181: SM_b20181 - ABC transporter substrate-binding protein, at 198,276 to 199,247
_b20181
Position (kb) 196
197
198 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 195.794 kb on + strand, within SM_b20178 at 195.795 kb on - strand, within SM_b20178 at 195.900 kb on + strand, within SM_b20178 at 195.900 kb on + strand, within SM_b20178 at 195.901 kb on - strand, within SM_b20178 at 195.901 kb on - strand, within SM_b20178 at 195.901 kb on - strand, within SM_b20178 at 196.313 kb on + strand, within SM_b20178 at 196.313 kb on + strand, within SM_b20178 at 196.314 kb on - strand, within SM_b20178 at 196.466 kb on + strand, within SM_b20178 at 196.467 kb on - strand, within SM_b20178 at 196.467 kb on - strand, within SM_b20178 at 196.686 kb on - strand at 196.686 kb on - strand at 196.760 kb on + strand at 196.761 kb on - strand at 196.962 kb on + strand, within SM_b20179 at 196.963 kb on - strand, within SM_b20179 at 197.013 kb on + strand, within SM_b20179 at 197.014 kb on - strand at 197.016 kb on - strand, within SM_b20179 at 197.089 kb on - strand, within SM_b20179 at 197.089 kb on - strand, within SM_b20179 at 197.147 kb on - strand, within SM_b20179 at 197.147 kb on - strand, within SM_b20179 at 197.219 kb on + strand, within SM_b20179 at 197.220 kb on - strand, within SM_b20179 at 197.237 kb on + strand, within SM_b20179 at 197.237 kb on + strand, within SM_b20179 at 197.237 kb on + strand, within SM_b20179 at 197.238 kb on - strand, within SM_b20179 at 197.340 kb on + strand, within SM_b20179 at 197.341 kb on - strand, within SM_b20179 at 197.562 kb on + strand, within SM_b20179 at 197.562 kb on + strand, within SM_b20179 at 197.562 kb on + strand, within SM_b20179 at 197.948 kb on + strand, within SM_b20180 at 197.967 kb on + strand, within SM_b20180 at 197.968 kb on - strand, within SM_b20180 at 197.971 kb on - strand, within SM_b20180 at 197.971 kb on - strand, within SM_b20180 at 197.971 kb on - strand, within SM_b20180 at 198.071 kb on - strand, within SM_b20180 at 198.159 kb on + strand, within SM_b20180 at 198.159 kb on + strand, within SM_b20180 at 198.159 kb on + strand, within SM_b20180 at 198.160 kb on - strand, within SM_b20180 at 198.160 kb on - strand, within SM_b20180 at 198.160 kb on - strand, within SM_b20180 at 198.400 kb on + strand, within SM_b20181 at 198.401 kb on - strand, within SM_b20181 at 198.568 kb on - strand, within SM_b20181 at 198.568 kb on - strand, within SM_b20181 at 198.711 kb on + strand, within SM_b20181
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 195,794 + SM_b20178 0.18 -1.6 195,795 - SM_b20178 0.19 -1.9 195,900 + SM_b20178 0.27 -0.3 195,900 + SM_b20178 0.27 +0.0 195,901 - SM_b20178 0.27 -0.4 195,901 - SM_b20178 0.27 -1.1 195,901 - SM_b20178 0.27 +0.7 196,313 + SM_b20178 0.62 -0.0 196,313 + SM_b20178 0.62 -0.7 196,314 - SM_b20178 0.62 +1.1 196,466 + SM_b20178 0.75 -0.6 196,467 - SM_b20178 0.75 +1.2 196,467 - SM_b20178 0.75 -0.9 196,686 - -1.0 196,686 - -2.5 196,760 + +0.7 196,761 - -0.9 196,962 + SM_b20179 0.20 -0.2 196,963 - SM_b20179 0.20 +0.9 197,013 + SM_b20179 0.26 +2.5 197,014 - +2.9 197,016 - SM_b20179 0.26 +2.2 197,089 - SM_b20179 0.33 +0.2 197,089 - SM_b20179 0.33 -0.2 197,147 - SM_b20179 0.39 -0.8 197,147 - SM_b20179 0.39 +1.4 197,219 + SM_b20179 0.47 -2.2 197,220 - SM_b20179 0.47 +0.1 197,237 + SM_b20179 0.49 -1.4 197,237 + SM_b20179 0.49 +0.9 197,237 + SM_b20179 0.49 +1.9 197,238 - SM_b20179 0.49 -0.6 197,340 + SM_b20179 0.59 +0.1 197,341 - SM_b20179 0.59 +1.0 197,562 + SM_b20179 0.82 -0.1 197,562 + SM_b20179 0.82 +0.9 197,562 + SM_b20179 0.82 -0.5 197,948 + SM_b20180 0.43 -0.5 197,967 + SM_b20180 0.47 +0.4 197,968 - SM_b20180 0.47 -0.1 197,971 - SM_b20180 0.48 -0.2 197,971 - SM_b20180 0.48 +1.0 197,971 - SM_b20180 0.48 +1.5 198,071 - SM_b20180 0.69 -0.1 198,159 + SM_b20180 0.87 -0.5 198,159 + SM_b20180 0.87 -0.5 198,159 + SM_b20180 0.87 -1.3 198,160 - SM_b20180 0.87 -0.0 198,160 - SM_b20180 0.87 -0.5 198,160 - SM_b20180 0.87 +0.9 198,400 + SM_b20181 0.13 -0.6 198,401 - SM_b20181 0.13 -0.3 198,568 - SM_b20181 0.30 +2.2 198,568 - SM_b20181 0.30 +1.4 198,711 + SM_b20181 0.45 +1.2
Or see this region's nucleotide sequence