Experiment: benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_626 and Pf1N1B4_627 overlap by 33 nucleotides Pf1N1B4_627 and Pf1N1B4_5174 are separated by 170 nucleotides Pf1N1B4_5174 and Pf1N1B4_628 are separated by 63 nucleotides
Pf1N1B4_626 - Quinolinate synthetase (EC 2.5.1.72), at 724,431 to 725,489
_626
Pf1N1B4_627 - hypothetical protein, at 725,457 to 725,573
_627
Pf1N1B4_5174 - tRNA-Lys-TTT, at 725,744 to 725,816
_5174
Pf1N1B4_628 - Queuosine Biosynthesis QueC ATPase, at 725,880 to 726,560
_628
Position (kb) 725
726 Strain fitness (log2 ratio) -2
-1
0
1
2 at 724.610 kb on + strand, within Pf1N1B4_626 at 724.935 kb on - strand, within Pf1N1B4_626 at 724.936 kb on + strand, within Pf1N1B4_626 at 724.937 kb on - strand, within Pf1N1B4_626 at 724.937 kb on - strand, within Pf1N1B4_626 at 724.937 kb on - strand, within Pf1N1B4_626 at 724.937 kb on - strand, within Pf1N1B4_626 at 724.937 kb on - strand, within Pf1N1B4_626 at 724.937 kb on - strand, within Pf1N1B4_626 at 724.937 kb on - strand, within Pf1N1B4_626 at 724.937 kb on - strand, within Pf1N1B4_626 at 724.937 kb on - strand, within Pf1N1B4_626 at 724.937 kb on - strand, within Pf1N1B4_626 at 724.937 kb on - strand, within Pf1N1B4_626 at 724.937 kb on - strand, within Pf1N1B4_626 at 725.072 kb on - strand at 725.072 kb on - strand, within Pf1N1B4_626 at 725.072 kb on - strand, within Pf1N1B4_626 at 725.084 kb on + strand, within Pf1N1B4_626 at 725.084 kb on + strand, within Pf1N1B4_626 at 725.085 kb on - strand, within Pf1N1B4_626 at 725.085 kb on - strand, within Pf1N1B4_626 at 725.341 kb on + strand, within Pf1N1B4_626 at 725.341 kb on + strand, within Pf1N1B4_626 at 725.342 kb on - strand, within Pf1N1B4_626 at 725.397 kb on - strand at 725.404 kb on + strand at 725.405 kb on - strand at 725.532 kb on - strand, within Pf1N1B4_627 at 725.532 kb on - strand, within Pf1N1B4_627 at 725.532 kb on - strand, within Pf1N1B4_627 at 725.532 kb on - strand, within Pf1N1B4_627 at 725.532 kb on - strand, within Pf1N1B4_627 at 725.532 kb on - strand, within Pf1N1B4_627 at 725.532 kb on - strand, within Pf1N1B4_627 at 725.532 kb on - strand at 725.576 kb on - strand at 725.576 kb on - strand at 725.576 kb on - strand at 725.715 kb on - strand at 725.715 kb on - strand at 725.715 kb on - strand at 725.715 kb on - strand at 725.887 kb on + strand at 725.887 kb on + strand at 725.955 kb on - strand, within Pf1N1B4_628 at 726.096 kb on + strand, within Pf1N1B4_628 at 726.097 kb on - strand, within Pf1N1B4_628 at 726.097 kb on - strand, within Pf1N1B4_628 at 726.176 kb on - strand, within Pf1N1B4_628 at 726.176 kb on - strand, within Pf1N1B4_628 at 726.274 kb on + strand, within Pf1N1B4_628 at 726.274 kb on + strand, within Pf1N1B4_628 at 726.274 kb on + strand, within Pf1N1B4_628 at 726.274 kb on + strand, within Pf1N1B4_628 at 726.275 kb on - strand, within Pf1N1B4_628 at 726.275 kb on - strand, within Pf1N1B4_628 at 726.275 kb on - strand, within Pf1N1B4_628 at 726.320 kb on + strand, within Pf1N1B4_628 at 726.320 kb on + strand, within Pf1N1B4_628 at 726.321 kb on - strand, within Pf1N1B4_628 at 726.321 kb on - strand, within Pf1N1B4_628 at 726.321 kb on - strand, within Pf1N1B4_628 at 726.321 kb on - strand, within Pf1N1B4_628 at 726.321 kb on - strand, within Pf1N1B4_628 at 726.321 kb on - strand, within Pf1N1B4_628 at 726.446 kb on - strand, within Pf1N1B4_628 at 726.463 kb on + strand, within Pf1N1B4_628 at 726.463 kb on + strand, within Pf1N1B4_628 at 726.463 kb on + strand, within Pf1N1B4_628 at 726.464 kb on - strand, within Pf1N1B4_628 at 726.464 kb on - strand, within Pf1N1B4_628
Per-strain Table
Position Strand Gene LocusTag Fraction benzoic 0.58 mg/ml remove 724,610 + Pf1N1B4_626 0.17 +0.2 724,935 - Pf1N1B4_626 0.48 +0.3 724,936 + Pf1N1B4_626 0.48 -0.3 724,937 - Pf1N1B4_626 0.48 +0.4 724,937 - Pf1N1B4_626 0.48 -1.7 724,937 - Pf1N1B4_626 0.48 -0.3 724,937 - Pf1N1B4_626 0.48 +0.9 724,937 - Pf1N1B4_626 0.48 +0.2 724,937 - Pf1N1B4_626 0.48 -1.2 724,937 - Pf1N1B4_626 0.48 +0.9 724,937 - Pf1N1B4_626 0.48 -1.1 724,937 - Pf1N1B4_626 0.48 +0.2 724,937 - Pf1N1B4_626 0.48 -1.4 724,937 - Pf1N1B4_626 0.48 +0.9 724,937 - Pf1N1B4_626 0.48 -0.4 725,072 - +0.5 725,072 - Pf1N1B4_626 0.61 -1.4 725,072 - Pf1N1B4_626 0.61 -0.1 725,084 + Pf1N1B4_626 0.62 +0.2 725,084 + Pf1N1B4_626 0.62 -1.4 725,085 - Pf1N1B4_626 0.62 -0.1 725,085 - Pf1N1B4_626 0.62 -0.3 725,341 + Pf1N1B4_626 0.86 +1.1 725,341 + Pf1N1B4_626 0.86 +0.0 725,342 - Pf1N1B4_626 0.86 -0.3 725,397 - -2.2 725,404 + +0.4 725,405 - +0.3 725,532 - Pf1N1B4_627 0.64 -1.1 725,532 - Pf1N1B4_627 0.64 -0.7 725,532 - Pf1N1B4_627 0.64 -0.8 725,532 - Pf1N1B4_627 0.64 -0.7 725,532 - Pf1N1B4_627 0.64 -1.4 725,532 - Pf1N1B4_627 0.64 +0.9 725,532 - Pf1N1B4_627 0.64 -0.1 725,532 - -1.1 725,576 - +0.3 725,576 - -1.4 725,576 - +0.3 725,715 - +0.3 725,715 - +0.9 725,715 - -0.6 725,715 - +0.9 725,887 + -0.1 725,887 + -0.7 725,955 - Pf1N1B4_628 0.11 +0.9 726,096 + Pf1N1B4_628 0.32 -0.4 726,097 - Pf1N1B4_628 0.32 -1.1 726,097 - Pf1N1B4_628 0.32 -2.1 726,176 - Pf1N1B4_628 0.43 +0.7 726,176 - Pf1N1B4_628 0.43 -1.4 726,274 + Pf1N1B4_628 0.58 +0.6 726,274 + Pf1N1B4_628 0.58 -1.1 726,274 + Pf1N1B4_628 0.58 -0.1 726,274 + Pf1N1B4_628 0.58 +1.1 726,275 - Pf1N1B4_628 0.58 +2.1 726,275 - Pf1N1B4_628 0.58 -0.7 726,275 - Pf1N1B4_628 0.58 -0.2 726,320 + Pf1N1B4_628 0.65 +1.5 726,320 + Pf1N1B4_628 0.65 -0.9 726,321 - Pf1N1B4_628 0.65 -0.7 726,321 - Pf1N1B4_628 0.65 -1.3 726,321 - Pf1N1B4_628 0.65 -2.4 726,321 - Pf1N1B4_628 0.65 -0.8 726,321 - Pf1N1B4_628 0.65 -1.1 726,321 - Pf1N1B4_628 0.65 +1.9 726,446 - Pf1N1B4_628 0.83 -0.1 726,463 + Pf1N1B4_628 0.86 +0.0 726,463 + Pf1N1B4_628 0.86 -0.1 726,463 + Pf1N1B4_628 0.86 -0.1 726,464 - Pf1N1B4_628 0.86 +0.1 726,464 - Pf1N1B4_628 0.86 +0.8
Or see this region's nucleotide sequence