Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_596

Experiment: benzoic 0.58 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_595 and Pf1N1B4_596 are separated by 150 nucleotidesPf1N1B4_596 and Pf1N1B4_597 are separated by 129 nucleotides Pf1N1B4_595 - Glucose ABC transport system, inner membrane component 1, at 686,561 to 687,505 _595 Pf1N1B4_596 - Glucose ABC transport system, periplasmic sugar-binding protein, at 687,656 to 688,963 _596 Pf1N1B4_597 - D-mannose isomerase (EC 5.3.1.7) (from data), at 689,093 to 690,352 _597 Position (kb) 687 688 689Strain fitness (log2 ratio) -2 -1 0 1 2at 686.688 kb on + strand, within Pf1N1B4_595at 686.688 kb on + strand, within Pf1N1B4_595at 686.688 kb on + strand, within Pf1N1B4_595at 686.689 kb on - strand, within Pf1N1B4_595at 686.718 kb on + strand, within Pf1N1B4_595at 686.719 kb on - strand, within Pf1N1B4_595at 686.825 kb on + strand, within Pf1N1B4_595at 686.838 kb on + strand, within Pf1N1B4_595at 686.839 kb on - strand, within Pf1N1B4_595at 686.970 kb on + strand, within Pf1N1B4_595at 686.970 kb on + strand, within Pf1N1B4_595at 686.971 kb on - strand, within Pf1N1B4_595at 686.971 kb on - strand, within Pf1N1B4_595at 687.276 kb on + strand, within Pf1N1B4_595at 687.276 kb on + strand, within Pf1N1B4_595at 687.276 kb on + strand, within Pf1N1B4_595at 687.276 kb on + strand, within Pf1N1B4_595at 687.276 kb on + strand, within Pf1N1B4_595at 687.276 kb on + strand, within Pf1N1B4_595at 687.276 kb on + strand, within Pf1N1B4_595at 687.276 kb on + strand, within Pf1N1B4_595at 687.276 kb on + strand, within Pf1N1B4_595at 687.276 kb on + strand, within Pf1N1B4_595at 687.276 kb on + strand, within Pf1N1B4_595at 687.277 kb on - strand, within Pf1N1B4_595at 687.277 kb on - strand, within Pf1N1B4_595at 687.277 kb on - strand, within Pf1N1B4_595at 687.277 kb on - strand, within Pf1N1B4_595at 687.300 kb on + strand, within Pf1N1B4_595at 687.300 kb on + strand, within Pf1N1B4_595at 687.354 kb on + strand, within Pf1N1B4_595at 687.354 kb on + strand, within Pf1N1B4_595at 687.354 kb on + strand, within Pf1N1B4_595at 687.354 kb on + strand, within Pf1N1B4_595at 687.354 kb on + strand, within Pf1N1B4_595at 687.354 kb on + strand, within Pf1N1B4_595at 687.354 kb on + strand, within Pf1N1B4_595at 687.360 kb on + strand, within Pf1N1B4_595at 687.361 kb on - strand, within Pf1N1B4_595at 687.619 kb on + strandat 687.620 kb on - strandat 687.620 kb on - strandat 687.620 kb on - strandat 687.620 kb on - strandat 687.658 kb on - strandat 688.041 kb on + strand, within Pf1N1B4_596at 688.041 kb on + strandat 688.041 kb on + strand, within Pf1N1B4_596at 688.042 kb on - strand, within Pf1N1B4_596at 688.042 kb on - strand, within Pf1N1B4_596at 688.083 kb on + strand, within Pf1N1B4_596at 688.311 kb on + strand, within Pf1N1B4_596at 688.311 kb on + strand, within Pf1N1B4_596at 688.311 kb on + strand, within Pf1N1B4_596at 688.431 kb on + strand, within Pf1N1B4_596at 688.432 kb on - strand, within Pf1N1B4_596at 688.432 kb on - strand, within Pf1N1B4_596at 688.551 kb on + strand, within Pf1N1B4_596at 688.551 kb on + strand, within Pf1N1B4_596at 688.551 kb on + strand, within Pf1N1B4_596at 688.551 kb on + strand, within Pf1N1B4_596at 688.551 kb on + strand, within Pf1N1B4_596at 688.965 kb on + strandat 688.965 kb on + strandat 688.965 kb on + strandat 688.965 kb on + strandat 688.965 kb on + strandat 688.965 kb on + strandat 688.966 kb on - strandat 688.966 kb on - strandat 688.968 kb on + strandat 688.968 kb on + strandat 688.969 kb on - strandat 688.986 kb on + strandat 688.986 kb on + strandat 688.987 kb on - strandat 688.987 kb on - strandat 689.016 kb on + strandat 689.017 kb on - strandat 689.017 kb on - strandat 689.025 kb on - strandat 689.025 kb on - strandat 689.034 kb on - strandat 689.083 kb on - strandat 689.083 kb on - strandat 689.083 kb on - strandat 689.086 kb on + strandat 689.086 kb on + strandat 689.086 kb on + strandat 689.086 kb on + strandat 689.086 kb on + strandat 689.086 kb on + strandat 689.086 kb on + strandat 689.086 kb on + strandat 689.087 kb on - strandat 689.087 kb on - strandat 689.087 kb on - strandat 689.087 kb on - strandat 689.087 kb on - strandat 689.087 kb on - strandat 689.087 kb on - strandat 689.087 kb on - strandat 689.087 kb on - strandat 689.087 kb on - strandat 689.087 kb on - strandat 689.188 kb on - strandat 689.322 kb on + strand, within Pf1N1B4_597at 689.322 kb on + strand, within Pf1N1B4_597at 689.323 kb on - strand, within Pf1N1B4_597at 689.434 kb on - strand, within Pf1N1B4_597at 689.434 kb on - strand, within Pf1N1B4_597at 689.434 kb on - strand, within Pf1N1B4_597at 689.524 kb on + strandat 689.524 kb on + strand, within Pf1N1B4_597at 689.524 kb on + strand, within Pf1N1B4_597at 689.524 kb on + strand, within Pf1N1B4_597at 689.524 kb on + strand, within Pf1N1B4_597at 689.524 kb on + strand, within Pf1N1B4_597at 689.524 kb on + strand, within Pf1N1B4_597at 689.524 kb on + strand, within Pf1N1B4_597at 689.524 kb on + strand, within Pf1N1B4_597at 689.525 kb on - strand, within Pf1N1B4_597at 689.525 kb on - strand, within Pf1N1B4_597at 689.525 kb on - strand, within Pf1N1B4_597at 689.525 kb on - strand, within Pf1N1B4_597at 689.525 kb on - strand, within Pf1N1B4_597at 689.525 kb on - strand, within Pf1N1B4_597at 689.525 kb on - strand, within Pf1N1B4_597at 689.525 kb on - strand, within Pf1N1B4_597at 689.525 kb on - strand, within Pf1N1B4_597at 689.528 kb on + strand, within Pf1N1B4_597at 689.529 kb on - strand, within Pf1N1B4_597at 689.637 kb on + strand, within Pf1N1B4_597at 689.638 kb on - strand, within Pf1N1B4_597at 689.643 kb on + strand, within Pf1N1B4_597at 689.643 kb on + strandat 689.644 kb on - strand, within Pf1N1B4_597at 689.644 kb on - strand, within Pf1N1B4_597at 689.644 kb on - strand, within Pf1N1B4_597at 689.691 kb on + strand, within Pf1N1B4_597at 689.692 kb on - strand, within Pf1N1B4_597at 689.692 kb on - strand, within Pf1N1B4_597at 689.692 kb on - strand, within Pf1N1B4_597at 689.692 kb on - strand, within Pf1N1B4_597at 689.829 kb on + strand, within Pf1N1B4_597at 689.857 kb on + strand, within Pf1N1B4_597

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Per-strain Table

Position Strand Gene LocusTag Fraction benzoic 0.58 mg/ml
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686,688 + Pf1N1B4_595 0.13 -0.3
686,688 + Pf1N1B4_595 0.13 -0.4
686,688 + Pf1N1B4_595 0.13 -0.4
686,689 - Pf1N1B4_595 0.14 +2.0
686,718 + Pf1N1B4_595 0.17 -1.0
686,719 - Pf1N1B4_595 0.17 -1.1
686,825 + Pf1N1B4_595 0.28 -0.6
686,838 + Pf1N1B4_595 0.29 -0.1
686,839 - Pf1N1B4_595 0.29 -0.4
686,970 + Pf1N1B4_595 0.43 -0.1
686,970 + Pf1N1B4_595 0.43 -1.1
686,971 - Pf1N1B4_595 0.43 -0.1
686,971 - Pf1N1B4_595 0.43 -0.5
687,276 + Pf1N1B4_595 0.76 +0.5
687,276 + Pf1N1B4_595 0.76 -0.6
687,276 + Pf1N1B4_595 0.76 +0.1
687,276 + Pf1N1B4_595 0.76 +0.4
687,276 + Pf1N1B4_595 0.76 -0.0
687,276 + Pf1N1B4_595 0.76 +0.5
687,276 + Pf1N1B4_595 0.76 -0.1
687,276 + Pf1N1B4_595 0.76 +0.5
687,276 + Pf1N1B4_595 0.76 -0.5
687,276 + Pf1N1B4_595 0.76 +0.7
687,276 + Pf1N1B4_595 0.76 +0.9
687,277 - Pf1N1B4_595 0.76 -0.1
687,277 - Pf1N1B4_595 0.76 -0.7
687,277 - Pf1N1B4_595 0.76 +0.1
687,277 - Pf1N1B4_595 0.76 +0.6
687,300 + Pf1N1B4_595 0.78 -0.5
687,300 + Pf1N1B4_595 0.78 -0.1
687,354 + Pf1N1B4_595 0.84 -0.7
687,354 + Pf1N1B4_595 0.84 -1.2
687,354 + Pf1N1B4_595 0.84 -0.3
687,354 + Pf1N1B4_595 0.84 -0.1
687,354 + Pf1N1B4_595 0.84 -1.5
687,354 + Pf1N1B4_595 0.84 -0.1
687,354 + Pf1N1B4_595 0.84 -1.1
687,360 + Pf1N1B4_595 0.85 -0.7
687,361 - Pf1N1B4_595 0.85 +1.5
687,619 + +0.3
687,620 - +0.9
687,620 - -1.2
687,620 - +2.5
687,620 - -0.7
687,658 - -1.1
688,041 + Pf1N1B4_596 0.29 -0.7
688,041 + -0.1
688,041 + Pf1N1B4_596 0.29 +0.1
688,042 - Pf1N1B4_596 0.30 -0.1
688,042 - Pf1N1B4_596 0.30 -1.1
688,083 + Pf1N1B4_596 0.33 +1.5
688,311 + Pf1N1B4_596 0.50 -0.5
688,311 + Pf1N1B4_596 0.50 -0.8
688,311 + Pf1N1B4_596 0.50 -0.1
688,431 + Pf1N1B4_596 0.59 -1.4
688,432 - Pf1N1B4_596 0.59 -1.2
688,432 - Pf1N1B4_596 0.59 -1.7
688,551 + Pf1N1B4_596 0.68 -2.1
688,551 + Pf1N1B4_596 0.68 -0.5
688,551 + Pf1N1B4_596 0.68 -0.1
688,551 + Pf1N1B4_596 0.68 -0.5
688,551 + Pf1N1B4_596 0.68 -1.3
688,965 + +0.5
688,965 + -1.1
688,965 + -1.1
688,965 + -2.1
688,965 + -1.9
688,965 + +1.4
688,966 - -0.7
688,966 - -0.1
688,968 + +1.9
688,968 + +0.9
688,969 - -0.1
688,986 + -1.4
688,986 + +0.4
688,987 - -0.3
688,987 - -0.5
689,016 + -0.6
689,017 - -0.1
689,017 - +0.2
689,025 - -0.9
689,025 - +0.6
689,034 - -0.9
689,083 - -0.3
689,083 - -0.1
689,083 - -1.4
689,086 + -0.7
689,086 + +0.6
689,086 + -0.3
689,086 + -1.1
689,086 + +0.9
689,086 + -1.4
689,086 + -0.4
689,086 + +0.3
689,087 - -1.9
689,087 - -0.6
689,087 - -0.5
689,087 - -0.7
689,087 - +1.1
689,087 - -1.2
689,087 - +1.5
689,087 - +0.5
689,087 - -0.7
689,087 - +0.9
689,087 - +0.6
689,188 - -1.3
689,322 + Pf1N1B4_597 0.18 +0.6
689,322 + Pf1N1B4_597 0.18 +0.2
689,323 - Pf1N1B4_597 0.18 -2.3
689,434 - Pf1N1B4_597 0.27 +0.3
689,434 - Pf1N1B4_597 0.27 -1.1
689,434 - Pf1N1B4_597 0.27 +0.6
689,524 + -0.4
689,524 + Pf1N1B4_597 0.34 +0.3
689,524 + Pf1N1B4_597 0.34 +0.9
689,524 + Pf1N1B4_597 0.34 -2.1
689,524 + Pf1N1B4_597 0.34 -0.1
689,524 + Pf1N1B4_597 0.34 -2.5
689,524 + Pf1N1B4_597 0.34 +0.6
689,524 + Pf1N1B4_597 0.34 +0.7
689,524 + Pf1N1B4_597 0.34 +1.4
689,525 - Pf1N1B4_597 0.34 +2.1
689,525 - Pf1N1B4_597 0.34 +0.9
689,525 - Pf1N1B4_597 0.34 -1.2
689,525 - Pf1N1B4_597 0.34 -0.7
689,525 - Pf1N1B4_597 0.34 -0.1
689,525 - Pf1N1B4_597 0.34 -0.3
689,525 - Pf1N1B4_597 0.34 +0.3
689,525 - Pf1N1B4_597 0.34 +1.5
689,525 - Pf1N1B4_597 0.34 +0.2
689,528 + Pf1N1B4_597 0.35 +0.5
689,529 - Pf1N1B4_597 0.35 -0.3
689,637 + Pf1N1B4_597 0.43 -0.1
689,638 - Pf1N1B4_597 0.43 -0.4
689,643 + Pf1N1B4_597 0.44 -0.1
689,643 + +1.5
689,644 - Pf1N1B4_597 0.44 -1.2
689,644 - Pf1N1B4_597 0.44 +0.1
689,644 - Pf1N1B4_597 0.44 +1.5
689,691 + Pf1N1B4_597 0.47 +0.0
689,692 - Pf1N1B4_597 0.48 -0.1
689,692 - Pf1N1B4_597 0.48 +0.2
689,692 - Pf1N1B4_597 0.48 +0.6
689,692 - Pf1N1B4_597 0.48 -0.1
689,829 + Pf1N1B4_597 0.58 +0.9
689,857 + Pf1N1B4_597 0.61 +0.5

Or see this region's nucleotide sequence